1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGTTGAGGAAGCTGGTGGCACAGTTTCTCGGATGGATGGAGGAAAGTTTTGTGTTTTTGATAGATCTGTTTTGGTTTCAAATGGTCAGCTCCATGCAAAGgttagtcttttctaattttgcttttgggagacatttatattgcaccttttggattacactggtgtcctttgactctaagagctctaacaggtttcatcgc...
species | Glycine max |
transcript | GLYMA06G25880.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTGTTTTTGATAGATCTGCTTTGGGTTCAAATGGTCAGCTCCATGCAAAG CTTCTGGAGAGAATTGGACCTGCAACAGAGAAACTAAAAAACAAGGGAATTEST: gi|213587035|gb|DB982710.1|DB982710
genomic: GTGTTTTTGATAGATCTGTTTTGGTTTCAAATGGTCAGCTCCATGCAAAGgttagtcttt ... tgcttcgcagCTTCTGGAGAGAATTGGACCTGCAACAGAGAAACTAAAAAACAAGGGAATT
EST: GTGTTTTTGATAGATCTGTTTTGGTTTCAAATGGTCAGCTCCATGCAAAG CTTCTGGAGAGAATTGGACCTGCAACAGAGAAACTAAAAAACAAGGGAATTEST: gi|51342073|gb|CO983339.1|CO983339
genomic: GTGTTTTTGATAGATCTGTTTTGGTTTCAAATGGTCAGCTCCATGCAAAGgttagtcttt ... tgcttcgcagCTTCTGGAGAGAATTGGACCTGCAACAGAGAAACTAAAAAACAAGGGAATT
EST: GTGTTTTTGATAGATCTGTTTTGGTTTCAAATGGTCAGCTCCATGCAAAG CTTCTGGAGAGAATTGGACCTGCAACAGAGAAACTAAAAAACAAGGGAATTEST: gi|31466178|gb|CD408206.1|CD408206
genomic: GTGTTTTTGATAGATCTGTTTTGGTTTCAAATGGTCAGCTCCATGCAAAGgttagtcttt ... tgcttcgcagCTTCTGGAGAGAATTGGACCTGCAACAGAGAAACTAAAAAACAAGGGAATT
EST: GTGTTTTTGATAGATCTGTTTTGGTTTCAAATGGTCAGCTCCATGCAAAG CTTCTGGAGAGAATTGGACCTGCAACAGAGAAACTAAAAAACAAGGGAATT
genomic: GTGTTTTTGATAGATCTGTTTTGGTTTCAAATGGTCAGCTCCATGCAAAGgttagtcttt ... tgcttcgcagCTTCTGGAGAGAATTGGACCTGCAACAGAGAAACTAAAAAACAAGGGAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGAGGAAGCTGGTGGCACAGTTTCTCGGATGGATGGAGGAAAGTTTTGTGTTTTTGATAGATCTGTTTTGGTTTCAAATGGTCAGCTCCATGCAAAGgttagtcttttctaattttgcttttgggagacatttatattgcaccttttggattacactggtgtcctttgactctaagagctctaacaggtttcatcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG