Sequence
atgc intronic sequence ATGC exonic sequenceGAATGTTCACAATAATGCATTCTATGCTGAAGAGACTTTGCTCAGATCTGAATTGGAAGCCATGCGTGATTGCAATTCTTTGACTGCTCGGCATTGGGTTgtaagtcttttgtgggttttaccgccaacttcaaactattggagttggtaattttgaattttgtcaaactgtcgaatacttatttgcattgcaatgatca...
Basic information
species | Glycine max |
transcript | GLYMA06G18810.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G18810.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G147884_T01 (Zea mays), 5'ss of exon 9
GAATGTTCACAATAATGCATTCTATGCTGAAGAGACTTTGCTCAGATCTGAATTGGAAGCCATGCGTGATTGCAATTCTTTGACTGCTCGGCATTGGGTTgtaagtcttttgtgggttttaccgccaacttcaaactattggagttggtaattttgaattttgtcaaactg--tcgaatacttatttgc-attgcaatgatca
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TAATGTGCATAATAATGCTTTCTATGCTGAAGAGAAGTTGCTCAAATCTGAGTTGCAAGCAATGCGTGATTGCGACCCTTCATCTGCCCGCCACTGGATTgtaagagctgttt---ttcttgttttaaccttttgttattcctaccagtactgttgtaccattacattatgcatttaatacctgttcattatctttatgctta
upper sequence: GLYMA06G18810.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 9
GAATGTTCACAATAATGCATTCTATGCTGAAGAGACTTTGCTCAGATCTGAATTGGAAGCCATGCGTGATTGCAATTCTTTGACTGCTCGGCATTGGGTTgtaagtcttttgtgggttttaccgccaacttcaaactattggagttggtaattttgaattttgtcaaactgtcgaatacttatttgcattgcaa-tgatca---
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TAATGTGCACAATAATGCATTTTATGCTGAAGAAAAACTGCTCAGATCTGAAATGCAAGCTATGCGTGATTGTGATCCATTGTCTGCCCGCCATTGGATTgtaagtcatccttgccctgcttctataatttataa--aatggatctat--attttgttttgtttgtatcacatgttttgtgagtgggcttgtaaatgcttgcaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8284376|gb|BE021935.1|BE021935EST: AATTGGAAGCCATGCGTGATTGCAATTCTTTGACTGCTCGGCATTGGGTT GTAAGGAACACGAGAACATGCAATAGAACTGGACAGTTGACAGGCTATAAG
genomic: AATTGGAAGCCATGCGTGATTGCAATTCTTTGACTGCTCGGCATTGGGTTgtaagtcttt ... aatccttcagGTAAGGAACACGAGAACATGCAATAGAACTGGACAGTTGACAGGCTATAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATGTTCACAATAATGCATTCTATGCTGAAGAGACTTTGCTCAGATCTGAATTGGAAGCCATGCGTGATTGCAATTCTTTGACTGCTCGGCATTGGGTTgtaagtcttttgtgggttttaccgccaacttcaaactattggagttggtaattttgaattttgtcaaactgtcgaatacttatttgcattgcaatgatca
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtggg