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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCAAGGGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCGgtaaggctacctgaaaattcaattttcttgttttttatctatacaatttccttttttctcctttgtggacttgagatggttcagatcagaggatggatgt...

Basic information

species Glycine max
transcript GLYMA06G16740.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16740.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv07s0031g03190.t01 (Vitis vinifera), 5'ss of exon 7
GGAGCAAGGGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCGgtaaggctacctgaaaattcaattttcttgttttttatctatacaatttccttttttctcctttgtggacttgagatggttcagatcagaggatggatgt
||||| | |||||| ||||||||||| |||||||| || ||||| |||||||| ||| | || ||||||||||||||| |||| |||||||||| ||| | |  ||| || |     |   |   |||    | |     | || | |||       ||   ||    | ||           |  
GGAGCGAAGGATGAGTTCACCCTTGATCTTGTAGAGCAGTGTTCATTTCAAAAGCAACGAGTAATGCATCTTGTGATGACTTCTCGgtaaggctcccttacagatcatttctgccactaactgattattgtttatttaggtgtcccttttcaatgactgctgtgtgcaatattcttttgcaagtaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9440498|gb|BE441001.1|BE441001
EST:     CAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCG                         AGATGAAAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAA
genomic: CAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCGgtaaggctac ... tcttttgtagAGATGAAAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAA
EST: gi|120530160|gb|EH258294.1|EH258294
EST:     CAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCG                         AGATGAAAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAA
genomic: CAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCGgtaaggctac ... tcttttgtagAGATGAAAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAA