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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCGTCGTGTTGTACTTATAACAAATGTCAAACCTGGAAAACTACGGGATGTGATGTCTCAAGGATTGgtattgatgctcatactggttgcatttgctaaattgttttgctgtgtgtagcttttgatggtcaagtaatcttaaagggatatatgcatttggctccctttgcag

Basic information

species Glycine max
transcript GLYMA06G14760.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14760.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G40660.1 (Arabidopsis thaliana), 5'ss of exon 9
AATCGTCGTGTTGTACTTATAACAAATGTCAAACCTGGAAAACTACGGGATGTGATGTCTCAAGGATTGgtattgatgctcatactggttgcatttgctaaattgttttgctgtgtgtagcttttgatggtcaagtaatcttaaagggatatatgcatttggctccctt--tgcag
|| || |  |||| ||| || |||||||||||||||||||| ||| | ||||| ||||| |||||| ||||| | |  ||| | |||  ||| |      |  |  |  ||| |    |   ||| |   ||    | | |        | | ||  ||||  | | ||  |||||
AACCGCCTCGTTGCACTCATCACAAATGTCAAACCTGGAAAGCTAAGAGATGTAATGTCACAAGGACTGgtaat-actctc-ttctgtctgcctcaatccagctcatcagctat-caaaatatttcacactctcaca-tttgctcattttctgtgtttttgatttctttgctgcag

upper sequence: GLYMA06G14760.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0067g03060.t01 (Vitis vinifera), 5'ss of exon 9
AATCGTCGTGTTGTACTTATAACAAATGTCAAACCTGGAAAACTACGGGATGTGATGTCTCAAGGATTGgtattgatgctcatactg-gttgcatttgctaaattgttttgctgtgtgtagcttttgatggtcaagtaatcttaaagggatatatgcatttggctccctt-tgcag
|| ||||||||||| || || |||||||| ||||||||||| ||||| |||||||||||  ||||| ||||| | ||  |     ||  ||    |||  | | | |  |  ||||| |    |||    ||||| |||    | | | || |     |   | |   || || | 
AACCGTCGTGTTGTGCTAATCACAAATGTTAAACCTGGAAAGCTACGAGATGTGATGTCAGAAGGACTGgtaatcatttttcccttgtattatggttgtcagactttgctcatgtgtctg--ctttatcagtcaaataa----agatgcatgt-catgtccagtttagttatgaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208067423|gb|GD865287.1|GD865287
EST:     TAACAAATGTCAAACCTGGAAAACTACGGGATGTGATGTCTCAAGGATTG                         GTCTTATGTGCTTCGGATGAAGGTCCAACCATTGTGGAGCCCTTGCTCCCT
genomic: TAACAAATGTCAAACCTGGAAAACTACGGGATGTGATGTCTCAAGGATTGgtattgatgc ... ccctttgcagGTCTTATGTGCTTCGGATGAAGGTCCAACCATTGTGGAGCCCTTGCTCCCT