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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctcactaacttttcatatgtttttttttcatgagtcaactcttgtttgcttagctattttgtatattatctatctctttgtgaagtaataacc...

Basic information

species Glycine max
transcript GLYMA06G14050.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv16s0098g01040.t01 (Vitis vinifera), 5'ss of exon 9
GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctcactaacttttcatatgtttttttttcatgagtcaactcttgtttgcttagctattttgtatattatctatctctttgtgaagtaataacc-----
||||||||||||||||| ||||| || || ||||| || ||||||||||| ||||| ||||||| | |||||| | |  || | || || |  | | | |     ||   | | ||||    || |||  | || |||| |  ||  |   |  ||||||||  |  |      
GTTCATCGCTTGAGGCTGCTTGGAGACTATCATCACTCTACTCGAATTGCTTTTGTCGAGTTTGTAATGgtaactacctacaagctcttaaactttctatgccatatcctttacctctcaggtg-ttactttttctgta-acaatgca---ccatgtgaagttctccctccttt

upper sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 9
lower sequence: EFJ23027 (Selaginella moellendorffii), 5'ss of exon 8
GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctca--ctaacttttcatatgtttttttttcatgagtcaactcttgtttgcttagctattttgtatattatctatctctttgtgaagtaataacc
||    ||||||||  | || || || ||||||||||| |||||||| || ||||||||||| |||||||| |      |   |   |  |     | |  ||  | | |     |  ||  || ||                                            
GTGTCGCGCTTGAGATTGCTGGGCGACTACCATCATTCTACTCGAATAGCGTTTGTTGAGTTCGCACTGgtgagcgaatagatttggtccttgggagctcgttgcttacggtcacaacctctttcgcag------------------------------------------

upper sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 9
lower sequence: EFJ30509 (Selaginella moellendorffii), 5'ss of exon 8
GTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctca--ctaacttttcatatgtttttttttcatgagtcaactcttgtttgcttagctattttgtatattatctatctctttgtgaagtaataacc
||    ||||||||  | || || || ||||||||||| |||||||| || ||||||||||| |||||||| |      |   |   |  |     | |  ||  | | ||    |  ||  || ||                                            
GTGTCGCGCTTGAGATTGCTGGGCGACTACCATCATTCTACTCGAATAGCGTTTGTTGAGTTCGCACTGgtgagcgaatagatttggtccttgggagctcgttgcttacgatcacaacctctttcgcag------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254343884|gb|GR857640.1|GR857640
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|193554375|gb|FK511348.1|FK511348
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGGCGGTGTGATCTTGGGTTC
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAG-CGGTGTGATCTTGGGTTC
EST: gi|27424740|gb|CA936260.1|CA936260
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|6481922|gb|AW201193.1|AW201193
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGGTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|193442856|gb|FK404234.1|FK404234
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|21888556|gb|BQ741769.1|BQ741769
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|193301047|gb|FK265554.1|FK265554
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|192319171|gb|FK009111.1|FK009111
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|193423912|gb|FK390251.1|FK390251
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|9205289|gb|BE331513.1|BE331513
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|193379415|gb|FK344861.1|FK344861
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGA
EST: gi|192319172|gb|FK009112.1|FK009112
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTTTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|9205272|gb|BE331496.1|BE331496
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|193407747|gb|FK373109.1|FK373109
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|254324021|gb|GR840446.1|GR840446
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTTTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|207734898|gb|GD710735.1|GD710735
EST:     AGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: AGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|6481926|gb|AW201197.1|AW201197
EST:     GGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAAGTTTGCCACTG                         CCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTC
genomic: GGGGATTACCATCATTCAACTCGAATTGCATTTGTTG-AGTTTG-CACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTC
EST: gi|193422971|gb|FK389282.1|FK389282
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|193682197|gb|FK622945.1|FK622945
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|151397590|gb|EV267463.1|EV267463
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|21677144|gb|BQ629495.1|BQ629495
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|8403307|gb|BE058941.1|BE058941
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCA-TTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|15661924|gb|BI699295.1|BI699295
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|254343883|gb|GR857639.1|GR857639
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTG                         GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGgtaatttctc ... attcttgcagGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA