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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAGgtaattaatatatattatagactattttaccttgatttaccattttactatgatcaattttgattttatttcctagaatgtgttatgtgcctttgtttct...

Basic information

species Glycine max
transcript GLYMA06G13240.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17022668|gb|BM093702.1|BM093702
EST:     CCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAG                         GTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCT
genomic: CCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAGgtaattaata ... cttctagcagGTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCT
EST: gi|31309499|gb|CD394702.1|CD394702
EST:     CCCCGATTCATACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAG                         GTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCT
genomic: CCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAGgtaattaata ... cttctagcagGTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCT
EST: gi|31305797|gb|CD391000.1|CD391000
EST:     CCCCGATTCTTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAG                         GTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCT
genomic: CCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAGgtaattaata ... cttctagcagGTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCT
EST: gi|208108565|gb|GD904827.1|GD904827
EST:     CCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAG                         GTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCT
genomic: CCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAGgtaattaata ... cttctagcagGTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAGgtaattaatatatattatagactattttaccttgatttaccattttactatgatcaattttgattttatttcctagaatgtgttatgtgcctttgtttct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG