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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACAATTAGCAGGCCTGTTAACACACTATGTTCCAAACCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAGgtgatgtgctaatattttttttatatcatgttattgtttataagtttcttggtttcactatcacctattatttatgaagatactctgatactgtactttccactccaacacag

Basic information

species Glycine max
transcript GLYMA06G13240.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13240.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0074g00190.t01 (Vitis vinifera), 5'ss of exon 9
AGCACAATTAGCAGGCCTGTTAACACACTATGTTCCAAACCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAGgtgatgtgctaat-attttttttatatcatgttattgtttataagtttcttggtttcactatcacctattatttatgaagatactctgatactgtactttccactccaacacag
 |||||||| |||||| || |     | | || ||| || ||  |||||||||| ||||||||||||||||| |||||||| | | ||||| ||    | ||  ||||  || |  ||| ||| |   |        || | |  || || ||  |    ||| | |     |  |  | | | | || ||  |   |     
GGCACAATTTGCAGGCATGCTGCTTAATTCTGGTCCGAATCTGGTGGATCCTAGAGGGAGACTTCTTCCTCGATCATATGACGTATTAGgtaattcattcattgttttaattctcccatattactacat--------ctggctagcattaccatttg--gtttgtcagttctcattctttcagcatttcccttttgcag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058163|gb|CA801077.1|CA801077
EST:     CCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAG                         GTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCC
genomic: CCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAGgtgatgtgct ... tccaacacagGTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCC
EST: gi|17022668|gb|BM093702.1|BM093702
EST:     CCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAG                         GTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCC
genomic: CCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAGgtgatgtgct ... tccaacacagGTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCC
EST: gi|31305797|gb|CD391000.1|CD391000
EST:     AGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAG                         GTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCC
genomic: AGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAGgtgatgtgct ... tccaacacagGTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCC
EST: gi|151398387|gb|EV268258.1|EV268258
EST:     CCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAG                         GTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCC
genomic: CCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAGgtgatgtgct ... tccaacacagGTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCC
EST: gi|10234343|gb|BE803231.1|BE803231
EST:     CCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAG                         GTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCC
genomic: CCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAGgtgatgtgct ... tccaacacagGTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCC