1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATTCTGGTGCTAGAGAAGCAGAAACTTCAGTTCTGCCACTTGTAAATGTAAACCATGAAGATGATGAATCAGAGGACGATTTTGCTCAACTAGCCCATAGgtgaaccccgaaagttctggcgaacattaaatcctggttatagttgcttcatcttttttagtgggcaatggggtaggggagggagggcgggagtcaaagg...
species | Glycine max |
transcript | GLYMA06G12570.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AACCATGAAGATGATGAATCAGAGGACGATTTTGCTCAACTAGCCCATAG GTCATCACGTGATACTCAGGCGCCGAATCGGAAACCAGCCTATGACAAGGCEST: gi|308098253|gb|HO759994.1|HO759994
genomic: AACCATGAAGATGATGAATCAGAGGACGATTTTGCTCAACTAGCCCATAGgtgaaccccg ... atgatttcagGTCATCACGTGATACTCAGGCGCCGAATCGGAAACCAGCCTATGACAAGGC
EST: AACCATGAAGATGATGAATCAGAGGACGATTTTGCTCAACTAGCCCATAG GTCATCACGTGATACTCAGGCGCCGAATCGGAAACCAGCCTATGACAAGGCEST: gi|19934603|gb|BQ079633.1|BQ079633
genomic: AACCATGAAGATGATGAATCAGAGGACGATTTTGCTCAACTAGCCCATAGgtgaaccccg ... atgatttcagGTCATCACGTGATACTCAGGCGCCGAATCGGAAACCAGCCTATGACAAGGC
EST: AACCATGAAGATGATGAATCAGAGGACGATTTTGCTCAACTAGCCCATAG GTCATCACGTGATACTCAGGCGCCGAATCGGAAACCAGCCTATGACAAGGCEST: gi|19453094|gb|BM954504.1|BM954504
genomic: AACCATGAAGATGATGAATCAGAGGACGATTTTGCTCAACTAGCCCATAGgtgaaccccg ... atgatttcagGTCATCACGTGATACTCAGGCGCCGAATCGGAAACCAGCCTATGACAAGGC
EST: AACCATGAAGATGATGAATCAGAGGACGATTTTGCTCAACTAGCCCATAG GTCATCACGTGATACTCAGGCGCCGAATCGGAAACCAGCCTATGACAAGGC
genomic: AACCATGAAGATGATGAATCAGAGGACGATTTTGCTCAACTAGCCCATAGgtgaaccccg ... atgatttcagGTCATCACGTGATACTCAGGCGCCGAATCGGAAACCAGCCTATGACAAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCTGGTGCTAGAGAAGCAGAAACTTCAGTTCTGCCACTTGTAAATGTAAACCATGAAGATGATGAATCAGAGGACGATTTTGCTCAACTAGCCCATAGgtgaaccccgaaagttctggcgaacattaaatcctggttatagttgcttcatcttttttagtgggcaatggggtaggggagggagggcgggagtcaaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggcggg