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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAAAGATAATTCTGTGGAGTTGACTGAGGAAGGAATTGATCTTGCTGAAATGGCTCTAGAAACTAATGACCTTTGGGATGAAAATGATCCCTGGGCCAGgtgaacattcttatactttaataattttttgaattaaacaatattcatttcactttggttggtgcttacttgttagtaatgcccaatggttgcttggcga...

Basic information

species Glycine max
transcript GLYMA06G12320.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G12320.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv18s0001g01860.t01 (Vitis vinifera), 5'ss of exon 11
TTAAAGATAATTCTGTGGAGTTGACTGAGGAAGGAATTGATCTTGCTGAAATGGCTCTAGAAACTAATGACCTTTGGGATGAAAATGATCCCTGGGCCAGgtgaacattcttatactttaataattttttgaattaaacaatattcatttcactttggttggtgcttacttgttagtaatgcccaatggttgcttggcga-----
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TTAAGGATAATTCAGTGGAGTTGACTGAGGAAGGAATTGCACTTGCTGAGATGGCTCTTGAAACTAATGACCTATGGGATGAAAATGATCCTTGGGCTAGgtgaacattg----actttcttactttttttg-tcactctgtgatatcattgccagagttgaccaaaagtggaatatgctcacagttgtttgttctttcaaccgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193481647|gb|FK446486.1|FK446486
EST:     ATGGCTCTAGAAACTAATGACCTTTGGGATGAAAATGATCCCTGGGCCAG                         ATTTGTGATGAATGCTATAAAAGCTAAAGAATTCTATCGCCGAGATGTGCA
genomic: ATGGCTCTAGAAACTAATGACCTTTGGGATGAAAATGATCCCTGGGCCAGgtgaacattc ... gttactgcagATTTGTGATGAATGCTATAAAAGCTAAAGAATTCTATCGCCGAGATGTGCA