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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGCTGCATATATATTTACAACCAACAAGAAGTTAAAGGAGCAGTTCGTAATGAATGTTCCTGCAGGGGGTTTGCTTGTCAATGACACTGTCTTACATgtaatatttcttattttaaaaattttccatgaatgcatgagtttgcgtgtgcctttatattataggattttatcgctgaacaggattaaggtcctaatca...

Basic information

species Glycine max
transcript GLYMA06G12010.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020050|gb|CX706792.1|CX706792
EST:     TAATGAATGTTCCTGCAGGGGGTTTGCTTGTCAATGACACTGTCTTACAT                         CTTGTCGTTGATACTTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGT
genomic: TAATGAATGTTCCTGCAGGGGGTTTGCTTGTCAATGACACTGTCTTACATgtaatatttc ... cctggtgcagCTTGTCGTTGATACTTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGT
EST: gi|254324506|gb|GR833931.1|GR833931
EST:     TAATGAATGTTCCTGCAGGGGGTTTGCTTGTCAATGACACTGTCTTACAT                         CTTGTCGTTGATACTTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGT
genomic: TAATGAATGTTCCTGCAGGGGGTTTGCTTGTCAATGACACTGTCTTACATgtaatatttc ... cctggtgcagCTTGTCGTTGATACTTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGT
EST: gi|151398427|gb|EV268298.1|EV268298
EST:     TAATGAATGTTCCTGCAGGGGGTTTGCTTGTCAATGACACTGTCTTACAT                         CTTGTCGTTGATACTTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGT
genomic: TAATGAATGTTCCTGCAGGGGGTTTGCTTGTCAATGACACTGTCTTACATgtaatatttc ... cctggtgcagCTTGTCGTTGATACTTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGT
EST: gi|23725278|gb|BU760599.1|BU760599
EST:     GAATGAATGTTCCTGCAGGGGGTTTGCTTGTCAATGACACTGTCTTACAT                         CTTGTCGTTGATACTTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGT
genomic: TAATGAATGTTCCTGCAGGGGGTTTGCTTGTCAATGACACTGTCTTACATgtaatatttc ... cctggtgcagCTTGTCGTTGATACTTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGT
EST: gi|254324505|gb|GR833930.1|GR833930
EST:     TAATGAATGTTCCTGCAGGGGGTTTGCTTGTCA-TGACACTGTCTTACAT                         CTTGTCGTTGATACTTTGCCATTTGGGG-AGTTGGG
genomic: TAATGAATGTTCCTGCAGGGGGTTTGCTTGTCAATGACACTGTCTTACATgtaatatttc ... cctggtgcagCTTGTCGTTGATACTTTGCCATTTGGGGGAGTTGGG
EST: gi|58020263|gb|CX707005.1|CX707005
EST:     TAATGAATGTTCCTGCAGGGGGTTTGCTTGTCAATGACACTGTCTTACAT                         CTTGTCGTTGATACTTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGT
genomic: TAATGAATGTTCCTGCAGGGGGTTTGCTTGTCAATGACACTGTCTTACATgtaatatttc ... cctggtgcagCTTGTCGTTGATACTTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGT
EST: gi|302141284|gb|HO212160.1|HO212160
EST:     TAATGAATGTTCCTGCAGGGGGTTTGCTTGTCAATGACACTGTCTTACAT                         CTTGTCGTTGATACTTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGT
genomic: TAATGAATGTTCCTGCAGGGGGTTTGCTTGTCAATGACACTGTCTTACATgtaatatttc ... cctggtgcagCTTGTCGTTGATACTTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGT
EST: gi|254317850|gb|GR826834.1|GR826834
EST:     TAATGAATGTTCCTGCAGGGGGTTTGCTTGTCAATGACACTGTCTTACAT                         CTTGTCGTTGATACTTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGT
genomic: TAATGAATGTTCCTGCAGGGGGTTTGCTTGTCAATGACACTGTCTTACATgtaatatttc ... cctggtgcagCTTGTCGTTGATACTTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGGCTGCATATATATTTACAACCAACAAGAAGTTAAAGGAGCAGTTCGTAATGAATGTTCCTGCAGGGGGTTTGCTTGTCAATGACACTGTCTTACATgtaatatttcttattttaaaaattttccatgaatgcatgagtttgcgtgtgcctttatattataggattttatcgctgaacaggattaaggtcctaatca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG