Sequence
atgc intronic sequence ATGC exonic sequenceTGACATAGGGAGATTCCATAAAGATGGTTGCCTTGAGATCATTGATAGGAAAAAGGACATAGTTAAACTACAGCATGGAGAATATGTGTCCTTGGGAAAGgtatgaatgttggtttgtggaatgcacttcgtttaatatttaataataattttattaaatacag
Basic information
species | Glycine max |
transcript | GLYMA06G11860.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G11860.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os11g06880.1 (Oryza sativa), 5'ss of exon 5
TGACATAGGGAGATTCCATAAAGATGGTTGCCTTGAGATCATTGATAGGAAAAAGGACATAGTTAAACTACAGCATGGAGAATATGTGTCCTTGGGAAAGgta---tgaatgttggtttgtgg---aatgcacttcgtttaa-tatt-taataataattttattaaat-acag
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TGACATTGGACGTTTGCATCCAGATGGTTGCCTTGAAATTATTGACCGTAAGAAGGACATAGTCAAGCTTCAACATGGTGAATATGTATCTTTAGGAAAGgtaagctaagcttccttttccagccaaattagcggcagtcagctattgtaatctaactattataaaaccacag
upper sequence: GLYMA06G11860.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G77590.1 (Arabidopsis thaliana), 5'ss of exon 10
TGACATAGGGAGATTCCATAAAGATGGTTGCCTTGAGATCATTGATAGGAAAAAGGACATAGTTAAACTACAGCATGGAGAATATGTGTCCTTGGGAAAGgtatgaatgttggtttgtggaatgcacttcgtttaatatttaataataattttattaaatacag---------------------------
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AGACATAGGACGATTTCACCCTGATGGCTGCCTCGAGATAATAGACCGAAAAAAGGATATCGTTAAACTTCAGCATGGAGAATATGTCTCCTTGGGCAAAgtat-agttttctcaatccgaataccctt--ttttgtcttcatcactcaattctccggagaagcttcttaaaacattcttttttttcgcag
upper sequence: GLYMA06G11860.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv18s0001g02810.t01 (Vitis vinifera), 5'ss of exon 11
TGACATAGGGAGATTCCATAAAGATGGTTGCCTTGAGATCATTGATAGGAAAAAGGACATAGTTAAACTACAGCATGGAGAATATGTGTCCTTGGGAAAGgtatgaatgttg---------gtttgtggaatgcacttcgtttaata----tttaataataattttatta--aatacag---------------------------------
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GGACATAGGGCAGTTTCATGCTGATGGTTGCCTTGAAATAATTGACCGTAGAAAGGACATAGTTAAACTTCAGCATGGAGAATATTTATCTCTAGGAAAGgtatgcatgatgtaaaataatgtttttcgtttttctttccttttcttctcctttgatttttattttattattattacctttttattttttaaactaataccttcctctacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10846186|gb|BF069147.1|BF069147EST: GGAGAATATGTGTCCTTGGGAAAG GTTGAGGCAGCTGTTTCTGCCAGTCCCTTCGTAGACAATATCATGTTGCAT
genomic: GGAGAATATGTGTCCTTGGGAAAGgtatgaatgt ... ttaaatacagGTTGAGGCAGCTGTTTCTGCCAGTCCCTTCGTAGACAATATCATGTTGCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGACATAGGGAGATTCCATAAAGATGGTTGCCTTGAGATCATTGATAGGAAAAAGGACATAGTTAAACTACAGCATGGAGAATATGTGTCCTTGGGAAAGgtatgaatgttggtttgtggaatgcacttcgtttaatatttaataataattttattaaatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA