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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATTTGGCCACTTACATTTCCATCAACAAgtacgtatatcatttttcgtccactacttaactggatatcttctgatctcggtaccataactgtgtatttcgcacagggattaccagattagcaattgtt...

Basic information

species Glycine max
transcript GLYMA06G11330.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G11330.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os09g27950.1 (Oryza sativa), 5'ss of exon 9
TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATTTGGCCACTTACATTTCCATCAACAAgtacgtatatcattt---ttcgtccactacttaactggatatcttctgatctcggtaccataactgtgtatttcgcacagggattaccagattagcaattgtt
| ||||||||||| ||||| |||||||| || ||||| ||||| ||||||||||||||||| |||||||||||  | ||||| ||||| || ||||||  ||| |  ||     |   | |      | ||| |    | || |||   |  | | |   | ||||    | | |          |||| || | | |     
TCTGGAAGTTTGGCGAAGACGGGAACAAGTATTTCCGCCATGCCACTGGGCAGATATATGCCATCTCAAAGGACCTTGCCACATACATCTCGATCAACCGgtaagcctagagaatggctgcacatgattcttcagacaaaatattcattttactgaattgttactgatactcttgtgtc----ccaccatataacccag----

upper sequence: GLYMA06G11330.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os02g35870.1 (Oryza sativa), 5'ss of exon 9
TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATTTGGCCACTTACATTTCCATCAACAAgtacgtatatcatttttcgtccactacttaactggatatcttctgatctcggtaccataactgtgtatttcgcacagggattaccagattagcaattgtt
  ||||| ||||| || || ||||||||||||||||| ||||| |||||||||||||| || || ||||| ||  | || || |||||||| |||||| |||| ||       ||    | |  | |    |   ||  ||| ||| |     |  |  | |||   || |    | |  ||  |||             
ACTGGAAATTTGGGGAGGAAGGGAACAAATACTTCCGTCATGCTACTGGGCAGATATACGCGATTTCAAAAGACCTCGCGACCTACATTTCAATCAACCAgtatgt-------ttcctatgccatgccatgcaaaat-ccttatgaccgaaaaaatactaatgt---ttccaatgatgttttgtcag-------------

upper sequence: GLYMA06G11330.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G133613_T02 (Zea mays), 5'ss of exon 8
TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATTTGGCCACTTACATTTCCATCAACAAgtacg-tatatcatttttcgtccactact-taactggatatcttctgatctcggtaccataactgtgtatttcgcacagggattaccagattagcaattgtt
| |||||||| ||||| || |||||||| |||||||| || || || ||||||||||| || ||||| |||||  | || || ||||| ||||||||| |||| |  | | | || ||| ||  || || |  || ||      |||     || | |  | |  | |   |    ||   |  ||| |   ||        
TCTGGAAGTTCGGAGAGGACGGGAACAAGTACTTCCGCCACGCCACGGGGCAGATATACGCCATCTCCAAGGACCTCGCGACCTACATCTCCATCAACCAgtaagacaaaaccttcttcttcttcttctctctcttgagtggcactggca--ggcagctgatccatatgcgttcaccatataccacc-gcccag--------

upper sequence: GLYMA06G11330.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G013079_T01 (Zea mays), 5'ss of exon 9
TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATTTGGCCACTTACATTTCCATCAACAAgtacgtatatcatttttcgtccactacttaactggatatcttctgatctcggtaccataactgtgtatttcgcacagggattaccagattagcaattgtt
  ||||| ||||| || || || || ||||||||||| ||||| || |||||||||||||| || || || ||| | || ||||| ||||| |||||| |||| ||   | | ||   || ||  || ||      | |||  | ||||         ||||    ||  |         ||| |||             
ACTGGAAATTTGGGGAGGAAGGAAATAAATACTTCCGTCATGCCACGGGGCAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCAgtatgt---ttaattcatgttcatgacatacagaagtgtctgttcatctaaagg--ggaactaatgatgcca-gtgatatttatcag-------------

upper sequence: GLYMA06G11330.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ23757 (Selaginella moellendorffii), 5'ss of exon 8
TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATTTGGCCACTTACATTTCCATCAACAAgtacgtatatcatttttcgtccactacttaactggatatcttctgatctcggtaccataactgtgtatttcgcacagggattaccagattagcaattgtt
 |||||||||||||||||| || || |  ||||| || || |||||||| ||| ||||||| || || |||||| |||| || || || ||||||||| |||| ||        ||   | ||    ||   |  | |||||||    | | | ||  |  |     | |  | |||                       
ATTGGAAGTTTGGAGAAGATGGCAATAGGTACTTTCGTCACGCAACTGGTCAGCTATATGCGATTTCCAAGGATCTGGCGACATATATCTCCATCAACCAgtatgt--------ttggatgcaagctttggattca-atcttcta--tttgtttcctgattttctcttctttcgcag-----------------------

upper sequence: GLYMA06G11330.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ30358 (Selaginella moellendorffii), 5'ss of exon 9
TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATTTGGCCACTTACATTTCCATCAACAAgtacgtatatcatttttcgtccactacttaactg-gatatcttctgatctcggtaccataactgtgtatttcgcacagggattaccagattagcaattgtt
  ||||||||||| ||||| || |||| |||||| || || ||||| || ||| | ||||  || ||||||||| |||| |||||||| || |||||| |||| ||  || |  || |      |   | |  | | || ||   |||||  |    |   |   | ||||    |||                       
ACTGGAAGTTTGGTGAAGACGGTAACAGATACTTTCGCCACGCAACAGGTCAGTTGTATGTGATTTCAAAGGATCTGGCGACTTACATCTCTATCAACCAgtaagtccattaagttcc-----ttgtctgatggtgttagctagcgatctttg----acttcctcggattttttccag-----------------------

upper sequence: GLYMA06G11330.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ28470 (Selaginella moellendorffii), 5'ss of exon 9
TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATTTGGCCACTTACATTTCCATCAACAAgtacgtatatcatttttcgtccactacttaactg-gatatcttctgatctcggtaccataactgtgtatttcgcacagggattaccagattagcaattgtt
  ||||||||||| ||||| || |||| |||||| || || ||||| || ||| | ||||| || ||||||||| |||| ||||||||  | |||||| |||| ||  || |  || |      |   | |  | | || ||   |||||  |    |   |   | ||||    |||                       
ACTGGAAGTTTGGTGAAGACGGTAACAGATACTTTCGCCACGCAACAGGTCAGTTGTATGCGATTTCAAAGGATCTGGCGACTTACATCGCTATCAACCAgtaagtccattaagttcc-----ttgtctgatggtgttagctagcgatctttg----acttcctcggattttttccag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254333197|gb|GR850447.1|GR850447
EST:     CTTACATTTCCATCAACAA                         GCCGA-TTTGCATAAATATGCTAATGAAGATGTCTCGCTTGGTGCATGGTT
genomic: CTTACATTTCCATCAACAAgtacgtatat ... acgactgcagGCCGATTTTGCATAAATATGCTAATGAAGATGTCTCGCTTGGTGCATGGTT
EST: gi|8283834|gb|BE021393.1|BE021393
EST:     CAGATATATGCAATCTCAAAGGATTTGGCCACTTACATTTCCATCAACAA                         GCCGATTTTGCATAAATATGCTAATGAAGATGTCTCGCTTGGTGCATGGTT
genomic: CAGATATATGCAATCTCAAAGGATTTGGCCACTTACATTTCCATCAACAAgtacgtatat ... acgactgcagGCCGATTTTGCATAAATATGCTAATGAAGATGTCTCGCTTGGTGCATGGTT
EST: gi|12691316|gb|BG157652.1|BG157652
EST:     CAGATATATGCAATCTCAAAGGATTTGGCCACTTACATTTCCATCAACAA                         GCCGATTTTGCATAAATATGCTAATGAAGATGTCTCGCTTGGTGCATGGTT
genomic: CAGATATATGCAATCTCAAAGGATTTGGCCACTTACATTTCCATCAACAAgtacgtatat ... acgactgcagGCCGATTTTGCATAAATATGCTAATGAAGATGTCTCGCTTGGTGCATGGTT
EST: gi|254333196|gb|GR850446.1|GR850446
EST:     CTTACATTTCCATCAACAA                         GCCGATTTTGCATAAATATGCTAATGAAGATGTCTCGCTTGGTGCATGGTT
genomic: CTTACATTTCCATCAACAAgtacgtatat ... acgactgcagGCCGATTTTGCATAAATATGCTAATGAAGATGTCTCGCTTGGTGCATGGTT
EST: gi|23052817|gb|BU577308.1|BU577308
EST:     CAGATATATGCAATCTCAAAGGATTTGGCCACTTACATTTCCATCAACAA                         GCCGATTTTGCATAAATATGCTAATGAAGATGTCTCGCTTGGTGCATGGTT
genomic: CAGATATATGCAATCTCAAAGGATTTGGCCACTTACATTTCCATCAACAAgtacgtatat ... acgactgcagGCCGATTTTGCATAAATATGCTAATGAAGATGTCTCGCTTGGTGCATGGTT