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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTGTTTCCATATACCAGCTTATTTCAGGAAAGACGAAAGAGgtcagaaatgctatattttatatgtgtgtgtatgtatattgcacttataattctacttgatacccatttttatatgcag

Basic information

species Glycine max
transcript GLYMA06G09240.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09240.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os01g54020.1 (Oryza sativa), 5'ss of exon 13
CTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTGTTTCCATATACCAGCTTATTTCAGGAAAGACGAAAGAGgtcagaaatgct-------atattttatatgtgtgtgtat-----gtatattgcacttataattctacttgatacccatttttatatgcag---------------------------------------------------------------------------------------------
|||||||||||||||| | |||||||||||||| ||||||||| | || || |||||| ||||| |||| || || ||||||||    |||  |       ||  |||  |    |    |      |  |   |||     |  |  || ||||      |||  | | |||                                                                                             
CTTGGAATTTGACAACCCAGAGAGGCCTGAATGCAACAATCTTCTCTCGATCTACCAGATTATTACAGGGAAAACTAAAGAGgtggccaatctttacatgcatgctttgcaaacctaaccaaccagagcgtgaagcagggtcacctgcacatgatggtttctttcgtgtccagtccagcgtcatgttttcttgttgacgatgacaagataattttcctagttcactatccaagaagttgatcgtttcaataattttattttgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208261252|gb|GE058706.1|GE058706
EST:     TAACAATCTTGTTTCCATATACCAGCTTATTTCAGGAAAGACGAAAGAAG                         GAAGTTGTGCA
genomic: TAACAATCTTGTTTCCATATACCAGCTTATTTCAGGAAAGACGAAAGA-Ggtcagaaatg ... ttatatgcagGAAGTTGTGCA
EST: gi|15203981|gb|BI426758.1|BI426758
EST:     GTAACAATCTTGTTTCCATATACCAGCTTATTTCAGGAAAGACGAAAGAG                         GAAGTTGTGCAGGAATGCCAAAACATGAACTGGGGCACATTCAAACCTCTT
genomic: GTAACAATCTTGTTTCCATATACCAGCTTATTTCAGGAAAGACGAAAGAGgtcagaaatg ... ttatatgcagGAAGTTGTGCAGGAATGCCAAAACATGAACTGGGGCACATTCAAACCTCTT
EST: gi|15662082|gb|BI699453.1|BI699453
EST:     GTAACAATCTTGTTTCCATATACCAGCTTATTTCAGGAAAGACGAAAGAG                         GAAGTTGTGCAGGAATGCCAAAACATGAACTGGGGCACATTCAAACCTCTT
genomic: GTAACAATCTTGTTTCCATATACCAGCTTATTTCAGGAAAGACGAAAGAGgtcagaaatg ... ttatatgcagGAAGTTGTGCAGGAATGCCAAAACATGAACTGGGGCACATTCAAACCTCTT