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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATCTTGGTCGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGTGGTCGGCTACCTTGGCAAGGATATCAGgttattattgtttcaaatagtcattttagtactaattgtaaatgaaaatatgactcttatgaaactttttgttacag

Basic information

species Glycine max
transcript GLYMA06G09190.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g54100.2 (Oryza sativa), 5'ss of exon 8
TCATCTTGGTCGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGTGGTCGGCTACCTTGGCAAGGATATCAGgttatt-attgtttcaaatagtcattttagtactaattgtaaatgaaaatatgactcttatgaaactttttgttacag
 ||||| ||  |||  |||||| | || ||||| || |||||||| |||||||| || || |||||||| || || || |||||||||||||| |||||||| |||    |   | |  | ||  |||| | || ||||||     | || | | |  |    |   | |   | |||
ACATCTAGGGAGAATCGGTAGCCGAAGGGATGATTTAGAATCTCTAGCTTACACACTAGTTTTTCTTCTACGGGGGCGTCTACCTTGGCAAGGTTATCAGgtaattcgccggacccaccattccatttatt-ctgattgtagtaatacatttaaataattgatagtgtgtgcctgcag

upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g10150.1 (Oryza sativa), 5'ss of exon 9
TCATCTTGGTCGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGTGGTCGGCTACCTTGGCAAGGATATCAGgttattattgtttca---aatagtcattttagtactaattgta--aatgaaaatatgactcttatgaaactttttgttacag
 ||  | ||  |||| ||  |||||||||||||| | ||||| ||||| ||||| ||| | || ||||| ||||| || || |||||||||||||  ||||||| | ||| || |    ||     ||||  | |||  || |  |||     | ||    | |||||     ||       
CCACTTGGGAAGAACTGGATGCAGGAGAGATGACCTTGAATCCCTTGCATACACACTTATTTTCCTTCTCCGTGGCCGCCTGCCTTGGCAAGGATTCCAGgttaattttgattgattttatgacttttttgttgctacatgcactaatttcgttttgtaattcatgaatgaacttag-----

upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G116151_T03 (Zea mays), 5'ss of exon 9
TCATCTTGGTCGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGTGGTCGGCTACCTTGGCAAGGATATCAGgttattattgtttcaa-----atagtcattttagtactaattgtaaatgaaaatatgactcttatgaaactttttgttacag
|||| | ||  |||| || |||||||| |||||| | ||||||||||| ||||| ||||| |||||||| |||||||| || |||||||||||||| ||||| |   ||||| |||     | | |   || | |||| ||      | |   |   | | | |  ||| |  || |     
TCATTTGGGGAGAACTGGAAGCAGGAGGGATGACCTTGAATCTCTTGCCTACACACTTGTATTTCTTCTGCGTGGTCGCCTTCCTTGGCAAGGATACCAGgtgaactttgttacaacctccaaattttcttaattactgatccccccttac--tcaaattttcagcaaaatgattttag---

upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G095634_T01 (Zea mays), 5'ss of exon 2
TCATCTTGGTCGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGTGGTCGGCTACCTTGGCAAGGATATCAGgttat-tattgtttcaaatagtcattttagtactaattgtaa--atgaaaatatgactcttatgaa-actttttgt-tacag
 ||||||||  |||||||||||||||| ||||| || |||||||| || || || || ||||||||||| || ||  | |||||||||||||| |||||||| |  ||| |  ||    || || ||  ||| | |||  |   ||| | || ||    | |||   | |||   | || ||
ACATCTTGGGAGAACAGGTAGCAGGAGGGATGATTTAGAATCTCTAGCATATACACTAGTCTTTCTTCTACGAGGATGTCTACCTTGGCAAGGTTATCAGgtaaaatataggatcctccagccactt--gtattgatttgagtgatgtatatgtgtacttgatgtttattttgcatctatag

upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G158177_T01 (Zea mays), 5'ss of exon 2
TCATCTTGGTCGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGTGGTCGGCTACCTTGGCAAGGATATCAGgttattattgtt-----tcaaatagtcatt----ttagtactaattgtaaatgaaaatatgactcttatgaaactttttgt-tacag----------------------
|||  | ||  |||| || || |||||||||||  | ||||| ||||| ||||| ||| | |||||||| ||||| || || |||||||||||||| ||||||| | | |||     ||   |   | ||    ||| | ||| || |   |    |||| | |      | | | ||||| |                          
TCACTTGGGAAGAACTGGGAGTAGGAGAGATGATCTTGAATCCCTTGCATACACGCTTATTTTTCTTCTACGTGGCCGCCTCCCTTGGCAAGGATACCAGgttagtttagttgatgttctggtcacctttattcttactcctacttttttgtttttatataaatgcccatagattgtttgtatgttatttcactcttcaatcaatttag

upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G045259_T02 (Zea mays), 5'ss of exon 9
TCATCTTGGTCGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGTGGTCGGCTACCTTGGCAAGGATATCAGgttattattgtt-----tcaaatagtcattttagtactaat-------tgtaaatgaaaatatgactcttatgaaactttttgttacag-----------------
 ||  | ||  |||| || || |||||||||||  | ||||| || || ||||||||| | |||||||| ||||| || || |||||||||||||| || |||| | | |||     ||   |   | ||||  ||||  |       | |   |   | |   |  || |  ||  ||||   |                     
CCACTTGGGAAGAACTGGGAGTAGGAGAGATGATCTTGAATCCCTCGCATACACTCTTATTTTTCTTCTCCGTGGCCGCCTCCCTTGGCAAGGATACCAAgttagtgtagttgatgttctgctcacctttttcttactcctactctttttttgtttttatttaaatactcacaaattttttatctgttattcttcaatcaatttag

upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G25760.2 (Arabidopsis thaliana), 5'ss of exon 9
TCATCTTGGTCGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGTGGTCGGCTACCTTGGCAAGGATATCAGgttattattgtttcaaatagtcattttagtactaattgtaaatgaaaatatgactc-tta--tgaaactttttgttacag----
                 | ||  |||| |||||| ||||||||||||||||||||||||| || |||||||| || ||||| || |||||||| || ||||||        |  |  || |  ||||| | |   | | || |     | | | || |||  |    || |||||||  |    
---------------TTGCAGTCGGAGGGATGACCTGGAATCTCTTGCTTACACTCTTGTTTTCCTTCTTCGAGGCCGGCTTCCATGGCAAGGGTACCAGGTTGGGGACACTAAAgttatttgttttatttcc--tggcaactttccttgtcaatcattaacttggtctatttgttagggagag

upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G25760.1 (Arabidopsis thaliana), 5'ss of exon 9
TCATCTTGGTCGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGTGGTCGGCTACCTTGGCAAGGATATCAGgttattattgtttcaaatagtcattttagtactaattgtaaatgaaaatatgactc-tta--tgaaactttttgttacag
|||||||||  ||||  | ||  |||| |||||| ||||||||||||||||||||||||| || |||||||| || ||||| || |||||||| || ||||||        |  |  || |  ||||| | |   | | || |     | | | || |||  |    || |||||||   
TCATCTTGGCAGAACTTGCAGTCGGAGGGATGACCTGGAATCTCTTGCTTACACTCTTGTTTTCCTTCTTCGAGGCCGGCTTCCATGGCAAGGGTACCAGgttggggacactaaagttatttgttttatttcc--tggcaactttccttgtcaatcattaacttggtctatttgttag--

upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0002g03680.t01 (Vitis vinifera), 5'ss of exon 9
TCATCTTGGTCGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGTGGTCGGCTACCTTGGCAAGGATATCAGgttattattgtttcaaatagtcattttagtactaattgtaaatgaaaatatgactcttatgaaactt-tttgttacag---------------------------------------------------
|||| | ||  |||| || || ||||||||||| |||||||||||||||||||||||| | || || || |||||||| |||||||||||||| |||||||||       ||  || |    ||   | |  |   |     | ||  |     ||  || ||| || ||  ||                                                       
TCATTTGGGGAGAACTGGCAGTAGGAGAGATGATTTGGAATCTCTTGCTTACACTCTTATTTTCCTCCTCCGTGGTCGTCTACCTTGGCAAGGTTATCAGgttggctccattcgaagttccgataaaatttgttccttctcttcaatttgaagttccgataaaatttgttccttgtcttcctttcaagtttttgacttgatttttttgttcttaaaatcccatatatag

upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 5'ss of exon 9
TCATCTTGGTCGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGTGGTCGGCTACCTTGGCAAGGATATCAGgttattattg---tttcaaatagtcattttagtactaattgtaaatgaaaatatgactcttatgaaactttttgttacag--------------------------------------------------------------------------------------------------
 ||| | ||  | || || || ||||| || ||||||||||| || ||||||||| | || || ||||| || ||||| || ||||||||||| ||||||||  | |||    ||     ||||   |   |    | |  | ||||  || ||   |||| |    |    |   |||                                                                                                   
ACATTTGGGAAGGACTGGGAGTAGGAGGGACGACTTGGAATCACTGGCTTACACTTTGGTATTCCTTCTGCGGGGTCGTCTTCCTTGGCAAGGTTATCAGgtactgattaactttgtggctagtagctaacgaggaagtgatcaatgtgaa-atttttcttttcttcccacatcccacatcccactttttttgtattttgtttgttttgttttgttttgttttttctttttcctctcactatttttcatttggacgtgctatatatttggttttgtag

upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ38433 (Selaginella moellendorffii), 5'ss of exon 7
TCATCTTGGTCGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGTGGTCGGCTACCTTGGCAAGGATATCAGgttattattgtttcaaatagtcattttagtactaattgtaaatgaaaatatgactcttatgaaactttttgttacag
 ||| | ||||| || || || ||  |||||||  ||||||||||||  ||||| || || ||||| |||||||||||||| |||||||||||||| ||||| |    ||||| ||    | | |||  |  |     |    |    |||                          
ACATTTGGGTCGTACTGGCAGTAGACGAGATGATCTGGAATCTCTTGGATACACGCTGGTGTTTCTCCTTCGTGGTCGGCTTCCTTGGCAAGGATACCAGgtcag-gctgttttaatatattagttttatgttttacatgggcgcttttatag------------------------

upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ31718 (Selaginella moellendorffii), 5'ss of exon 7
TCATCTTGGTCGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGTGGTCGGCTACCTTGGCAAGGATATCAGgttattattgtttcaaatagtcattttagtactaattgtaaatgaaaatatgactcttatgaaactttttgttacag
 ||| | ||||| || || || ||  |||||||  ||||||| ||||  ||||| || || ||||| |||||||||||||| |||||||||||||| ||||| |    ||||| ||      ||||||||  || |  |  |           || ||||                 
ACATTTGGGTCGCACTGGCAGTAGACGAGATGATCTGGAATCGCTTGGATACACGCTAGTGTTTCTCCTTCGTGGTCGGCTTCCTTGGCAAGGATACCAGgtcag-gctgttttaa-----tattttagttttattgttttacatgggcg---cttttatag---------------