1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAAGCAGGGTTGAGAGCCAGCTGAAGCTAGTGATTAGGCCCATGTACTCAAGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagccaagcttctgctttcctaagatgaactacacaaagaaggatttgttgttgactatcttattattctttccccacttcttttttttctgatg...
species | Glycine max |
transcript | GLYMA06G08670.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|38193158|gb|CF922364.1|CF922364
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTTTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|6725700|gb|AW310099.1|AW310099
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTCCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|6746798|gb|AW317254.1|AW317254
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|4396219|gb|AI495216.1|AI495216
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|254340295|gb|GR858420.1|GR858420
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|15662685|gb|BI700056.1|BI700056
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|7590445|gb|AW706197.1|AW706197
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|254323227|gb|GR840032.1|GR840032
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAG-ACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|8403661|gb|BE059295.1|BE059295
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|19270398|gb|BM886654.1|BM886654
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|37994228|gb|CF805974.1|CF805974
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|209714939|gb|BW650785.1|BW650785
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|13181381|gb|BG352782.1|BG352782
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTTCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GGATTTGTTCAATGACTGGACTATTGAGTTGAAAGCAATGGCTGATCGCATEST: gi|254340294|gb|GR858419.1|GR858419
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|214003944|gb|DB985213.1|DB985213
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: GTCCTCCCATTCATGG-GACATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|6846499|gb|AW348789.1|AW348789
genomic: GTCCTCCCATTCATGGTG-CATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|209696908|gb|BW660473.1|BW660473
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|254323228|gb|GR840033.1|GR840033
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|6848342|gb|AW350632.1|AW350632
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|120493721|gb|EH221888.1|EH221888
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTTTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATEST: gi|298196784|gb|HO041527.1|HO041527
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|19346696|gb|BM891576.1|BM891576
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAEST: gi|18040205|gb|BM308499.1|BM308499
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAA
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|17963124|gb|BM269877.1|BM269877
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: CATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATEST: gi|15813436|gb|BI785711.1|BI785711
genomic: CATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
EST: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCG GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
genomic: AGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagcc ... tctctttcagGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGCAGGGTTGAGAGCCAGCTGAAGCTAGTGATTAGGCCCATGTACTCAAGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGgtaatgagccaagcttctgctttcctaagatgaactacacaaagaaggatttgttgttgactatcttattattctttccccacttcttttttttctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc