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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTATTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGgtaggatgaccctcaaactctcttccccttcacaagttttggaacttccatttaaggagacttgttcccttttctaccttcttacttcaatgcctgaata...

Basic information

species Glycine max
transcript GLYMA06G08620.3
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298185323|gb|HO030536.1|HO030536
EST:     TTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTG                         GTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGC
genomic: TTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGgtaggatgac ... ttccctccagGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGC
EST: gi|254349304|gb|GR860102.1|GR860102
EST:     TTCAGCAAGGCCA-TTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTG                         GTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGC
genomic: TTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGgtaggatgac ... ttccctccagGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGC
EST: gi|58024459|gb|CX711200.1|CX711200
EST:     TTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTG                         GTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGC
genomic: TTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGgtaggatgac ... ttccctccagGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGC
EST: gi|254349303|gb|GR860101.1|GR860101
EST:     TTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTG                         GTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGC
genomic: TTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGgtaggatgac ... ttccctccagGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGC
EST: gi|21887533|gb|BQ740746.1|BQ740746
EST:     CCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTG                         GTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGC
genomic: CCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGgtaggatgac ... ttccctccagGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGC
EST: gi|5342731|gb|AI795015.1|AI795015
EST:     TCAGCAAGGCCCATTT-CAATGCTTGGCCTTGGTGATATTGTTATCCCTG                         GTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGC
genomic: TCAGCAAGGCC-ATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGgtaggatgac ... ttccctccagGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTTATTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGgtaggatgaccctcaaactctcttccccttcacaagttttggaacttccatttaaggagacttgttcccttttctaccttcttacttcaatgcctgaata

- - - - - - - - - - -  AGCAAG