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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTGATTTGCGGGATCCTTGGCCTTCCTCCTTCCAATGGAGTCCTTCCACAGTCCCCCATGCATACAAAGAGTTTAGCAGTCCTTAGGAGGCGGgtaaatatcatctattgcatcaagactatcctaggttcttatttattaaatatcaactcaatttagattcttgttttacgttataaatttgcag

Basic information

species Glycine max
transcript GLYMA06G07480.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G07480.1 (Glycine max), 5'ss of exon 9
lower sequence: AT4G32510.1 (Arabidopsis thaliana), 5'ss of exon 8
ACTCTGATTTGCGGGATCCTTGGCCTTCCTCCTTCCAATGGAGTCCTTCCACAGTCCCCCATGCATACAAAGAGTTTAGCAGTCCTTAGGAGGCGGgtaaatatcatctattgcatcaagactatcctaggttcttatttattaaatatcaactcaatttagattcttgttttacgttataaatttgcag
|| || || || ||  | ||||| ||||||||||| ||||| ||| ||||||| ||||| ||||| ||||||||| | ||||| |||| || || ||| |     |   || | || |    |  | ||| || |   || ||  | |||   | ||    | || |||| | |  ||  |         
ACACTAATCTGTGGCCTACTTGGACTTCCTCCTTCGAATGGGGTCATTCCACAATCCCCTATGCACACAAAGAGTCTTGCAGTTCTTAAGAAGCAGgttagagaaa---atcgaataatttttcccttagtttttacattgtttgaaatc---tgaaac--gttttttgtatca-attgcag--------

upper sequence: GLYMA06G07480.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv04s0008g04980.t01 (Vitis vinifera), 5'ss of exon 8
ACTCTGATTTGCGGGATCCTTGGCCTTCCTCCTTCCAATGGAGTCCTTCCACAGTCCCCCATGCATACAAAGAGTTTAGCAGTCCTTAGGAGGCGGgtaaatatcatctattgcatcaagactatcctaggttctt-atttat-----taaatatcaa----ctcaatttagattcttgttttacgttataaat---ttgcag
|||||| |||| ||| | |||||  |||||||||| ||||||||||| ||||| ||||||||||| || |||||| | |||||||| | || || |||    ||  ||||||  | | |||  ||  |    |||| | | ||     ||| | ||||    |   |||| |||||||     || | ||  ||   ||| ||
ACTCTGCTTTGTGGGTTGCTTGGATTTCCTCCTTCAAATGGAGTCCTCCCACAATCCCCCATGCACACTAAGAGTCTTGCAGTCCTCAAGAAGCTGgtggg-atattctattctacctagaagataatttcctcttcactgatagtgctaactgtcaataacccagatttggattcttagacaacatgatttatactttgtag