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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctataattttatctccttcagacagttggtttttcagatgataaaaaatgtgattaacatgaaaaatattcctgggcattctaacacatcaaaattttatgtag

Basic information

species Glycine max
transcript GLYMA06G06850.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G06850.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os05g11730.1 (Oryza sativa), 5'ss of exon 9
GTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtc----tataattttatct-ccttcagacagttggtttttcagatgataaaaaatg-tgattaacatgaaaaatattcctgggcattctaacacatcaaaattttatgtag------------------------------------------------------------------------
|| ||||| ||||| ||||| |||||| |||| || ||||| || || || |  || ||||||||||||||||||||||| ||||| |||||||||||     || ||| |||||    || || ||  |      |||  |  || |   |  ||   |||    ||||| |  ||||||    |  ||     | ||| |    |                                                                         
GTTCTTGGTACACCAACCCGTGAGGAAATACGTTGCATGAACCCGAACTATACAGAGTTTAGGTTTCCACAGATAAAAGCTCACCCTTGGCACAAGgtaagcatacaatcttatccatgttgagtcatatatcacgtcatcttttatagtttcctggacaactatgaaaatgtagctgggctcatttccaataatagattctggacaccagatagctttacaatgcaatgtataaataaggaggtgcatacaggtactgatttttctaacttctgcgtag

upper sequence: GLYMA06G06850.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
GTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctata--------attttatctcc-ttcaga-cagttggtttttcagatgataaaaaatgtgatta---acatgaaaa--atattcctgggcattctaacacatca------aaattttatgtag-------------------------------------------------------------------------
|| ||||| || || ||||| |||||  |||| || ||||||||||| || | ||| || |||||||| |||||||| || || |||||||||||||| |  |        ||  | | ||  |||| | |  ||     ||        |   | |||  ||    || || |    | | |||      || | | |   |       || || | || ||                                                                         
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag

upper sequence: GLYMA06G06850.1 (Glycine max), 5'ss of exon 9
lower sequence: AT4G18710.1 (Arabidopsis thaliana), 5'ss of exon 8
GTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctataattttatctccttcagaca-gttggtttttcagatgataaaaaatgtgattaacatgaaaaatattcctgggcattctaacacatcaaaattttatgtag
|| ||||| ||||| || ||||| ||| | || |||||||||||  ||||||  || || ||||||||||||||||| ||||| || |||||||||||   |   |||      ||   |   |||  | |||||| |  |          || ||| |||  |  ||| |       | ||                     
GTTCTTGGTACACCAACTCGAGAAGAAATCCGTTGTATGAATCCACATTACACAGATTTCAGGTTTCCACAGATAAAGGCACATCCCTGGCACAAGgttagtgtcttttctctttttgcatgtgttcttgtttcagtttctttcttcacacatcaac-tgatcataattacgttttggtttag--------------------

upper sequence: GLYMA06G06850.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 9
GTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctataattt---tatctccttcagacagttggtttttcagatgataaaaaatgtgattaacatgaaaaatattcctgggcattctaacac-atcaaaattttatgtag
|| ||||| ||||| || || || ||| | |||||||||||||| | ||| | ||| ||||||||||||||||||||||||||||| ||||||||||| |  | |||   ||| |||     |  || | ||| |||| | |||| ||    ||| |        ||||     |   ||  | | |  ||| | |          
GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcattttatttatttcccctttattgtggttttgtcagttaataacaacatagatgagaccagttaataacaacgtagatcattatattatctata----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10236817|gb|BE805705.1|BE805705
EST:     ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTT
genomic: ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctataatt ... ttttatgtagATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTT
EST: gi|6482526|gb|AW201783.1|AW201783
EST:     ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTT
genomic: ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctataatt ... ttttatgtagATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTT
EST: gi|15815079|gb|BI787354.1|BI787354
EST:     ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTT
genomic: ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctataatt ... ttttatgtagATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTT
EST: gi|207696688|gb|GD676977.1|GD676977
EST:     ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGAATGCCTCC
genomic: ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctataatt ... ttttatgtagATATTCCACAAAAAGA-TGCCTCC
EST: gi|193456694|gb|FK423524.1|FK423524
EST:     ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTT
genomic: ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctataatt ... ttttatgtagATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTT
EST: gi|193557800|gb|FK513639.1|FK513639
EST:     ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTT
genomic: ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctataatt ... ttttatgtagATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTT
EST: gi|254320416|gb|GR826865.1|GR826865
EST:     ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTT
genomic: ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctataatt ... ttttatgtagATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTT
EST: gi|7590646|gb|AW706394.1|AW706394
EST:     ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTT
genomic: ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctataatt ... ttttatgtagATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTT
EST: gi|14990804|gb|BI316477.1|BI316477
EST:     ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGATGCCTGCAGAAGCTATTGATCTTGCATTCCGGCTT
genomic: ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctataatt ... ttttatgtagATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTT
EST: gi|6455159|gb|AW185842.1|AW185842
EST:     ATTACAATGACTNTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACANAAAGATGCCTCCAGAAGCTATTGATCTCGCATCCCGGCTT
genomic: ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctataatt ... ttttatgtagATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTT
EST: gi|193370322|gb|FK338158.1|FK338158
EST:     ATTACAATGACTTTAGGTTTCCTCAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCAT
genomic: ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctataatt ... ttttatgtagATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCAT
EST: gi|10843146|gb|BF066460.1|BF066460
EST:     ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAG                         ATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTT
genomic: ATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctataatt ... ttttatgtagATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTT