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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCTTGCGAGGTAACAATTTGGTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTTgtaagttagaacattgactctttttatttcaagccttgaaagtttacatttccttaaacaaaatgtaattagtttcttcataccattttgcag

Basic information

species Glycine max
transcript GLYMA06G05900.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G05900.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 8
TGGCTTGCGAGGTAACAATTTGGTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTTgtaagtt---agaacattgactctttttatttcaagcc--ttgaaagtttacatttccttaaacaaaatgtaattagtttcttcataccattttgcag------------
|||  ||||||| ||||||||||| ||| |  | ||||| || ||||||||||| ||||| ||||||||||||||||||      || || ||  ||      |  | ||  |    |||||     |   |  | || |  | |    |||   ||  | ||||| |              
TGGGCTGCGAGGAAACAATTTGGTTGGTACTTTGTCTCCTGATATGTGCCAGTTGACTGGGTTGTGGTATTTgtaagttttcgatacctttacctttccctcctagaacccatcctcagttttttcatttattgaaaatacttgagggcttttcccaatctatttttctctaccatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193373521|gb|FK340293.1|FK340293
EST:     GTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTT                         TGACGTGAGAAACAATAGCTTGACGGGCAGTATTCCTGAAAACATAGGCAA
genomic: GTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTTgtaagttaga ... cattttgcagTGACGTGAGAAACAATAGCTTGACGGGCAGTATTCCTGAAAACATAGGCAA
EST: gi|207764192|gb|GD738007.1|GD738007
EST:     GTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTT                         TGACGTGAGAAACAATAGCTTGACGGGCAGTATTCCTGAAAACATAGGCAA
genomic: GTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTTgtaagttaga ... cattttgcagTGACGTGAGAAACAATAGCTTGACGGGCAGTATTCCTGAAAACATAGGCAA
EST: gi|207789285|gb|GD760787.1|GD760787
EST:     ACTTTCTACCAGACATTGTGCCAGTTAACTGGATTGTGGTATTT                         TGACGTGAGAAACAATAGCTTGGACGGGCAGTATTCCTGAAAACATAGGCA
genomic: ACTTTCT-CCAGACA-TGTGCCAGTTAACTGGATTGTGGTATTTgtaagttaga ... cattttgcagTGACGTGAGAAACAATAGCTT-GACGGGCAGTATTCCTGAAAACATAGGCA
EST: gi|193419263|gb|FK382759.1|FK382759
EST:     GTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTT                         TGACGTGAGAAACAATAGCTTGACGGGCAGTATTCCTGAAAACATAGGCAA
genomic: GTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTTgtaagttaga ... cattttgcagTGACGTGAGAAACAATAGCTTGACGGGCAGTATTCCTGAAAACATAGGCAA