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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAGGTGTTGTTAAATTGATGGGCCGGTACAGTGgtaagtttcttgaatgcctccactgatcagattaatcattagcatcctgtacttcattgacatattatgttaattattttcttgatacatggtgcatggtgcag

Basic information

species Glycine max
transcript GLYMA05G36050.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36050.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 5'ss of exon 7
GCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAGGTGTTGTTAAATTGATGGGCCGGTACAGTGgtaagtttcttgaatgcctccactgatca-gattaatcattagcatcctgtacttcattgacatattatgttaattattttcttgataca-tggtgcatggtgcag
|| || |||||||||||  | || || ||||| || |||||||||||||| ||||  || |||||||| |||||||| ||| | ||||| ||  ||||||||| ||  ||      ||     |||| | |||| || |       ||   |  |   |  || |   |  |||  |  ||    ||  | || | ||        
GCGGTGGAGGAGGCTCAGAGGGCCATCAATGCTGCTCATGTTGAGGCTGAGAGTGCAGAGAATGGCATTGGTGTTGTGAAACTAATGGGGCGCAACAGTGgtatgtacctc-----cccaatatgattatgatttatgaacttgcccccacatatt-ctaccagaaagtactaaggagctttaaaatttactgctacag-------

upper sequence: GLYMA05G36050.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G443985_T02 (Zea mays), 5'ss of exon 9
GCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAGGTGTTGTTAAATTGATGGGCCGGTACAGTGgtaagtttcttgaatgcctccactgatcagattaatcattagcatcctgtacttcattgacatattatgttaattattttcttgatacatggtgcatggtgcag-----
|| || ||||||||||||||||| |||||||| || ||||| ||||||| ||||| ||| ||||| |||||| |||| ||  | ||||| ||| ||||||||||| ||||   |          ||  | ||||     ||  || |  ||  |     | ||||  ||| ||||| ||   | |  | ||  | ||    | |     
GCAGTCGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAGGCTGTAAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTGgtaagcttctacgaga-----ggcgaataaatta--tgctaatatacgatatctgtcaaatatat-gtgtcaattaattaactaactcttga-gtatttctctgctaat

upper sequence: GLYMA05G36050.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM5G816636_T02 (Zea mays), 5'ss of exon 9
GCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAGGTGTTGTTAAATTGATGGGCCGGTACAGTGgtaagtttct-tgaatgcctccactgatcagattaatcattagcatcctgtacttcattgacat--attatgttaattattttcttgatacatggtgcatggtgcag-
|| |||||||||||||||||||| |||||||| || ||||| || |||| ||||| ||| ||||| |||||| | || ||  | ||||||||| ||||||||||| |||| |||  |     ||  ||  |  |    | || |||    ||||| ||     |  ||| | |   | |  |   | |  | ||| | |||   | | 
GCAGTTGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAAGCTGTAAGTGCTGAGAATGGTATAGGTCTCGTCAAGCTAATGGGCCGGCACAGTGgtaagcttctatgagag-----accaatatg--tggctagtaacatatgatacttgatgcctgtcaattgtatgtgtcaactaactaactcttgg-gtatgtatctgc

upper sequence: GLYMA05G36050.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 5'ss of exon 9
GCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAGGTGTTGTTAAATTGATGGGCCGGTACAGTGgtaagtttcttgaatgcctccactgatcagattaatcattagcatcctgtacttcattgacatatt-atgttaattattttcttgatacatgg-tgcatggtgcag
|||||||||||||| ||||||||||| |||||||||||||||||  ||||||||   || ||| | || |||||||| || || ||||| || ||||| ||||||||||    ||| ||  | ||  || ||   ||||  || ||   |  || |  |   | || |||| ||    | |  |  |    |  ||||||| | | 
GCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTGGTGTTGTCAAGTTAATGGGTCGCTACAGCGgtaagtttc----atgtctttattgtccatat-gttcatctgcctcacttcttttaaggtagtcttcatgtcaacagctcttctattctgagaatgcatggagga-