1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGGAGTTTTGTATGATTTGCTGCAGAAAGAGGTCTTAGCCTTGAGGAAAGCTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAAgttagtatttatttgtttttggatattaatcttagatttctaattgataattataatcttagctaactgttgcaatggttgttatctgtcag
species | Glycine max |
transcript | GLYMA05G34560.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAA ATGCTGGCAAAGAAAGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCAEST: gi|15812917|gb|BI785192.1|BI785192
genomic: CTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAAgttagtattt ... tatctgtcagATGCTGGCAAAGAAAGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCA
EST: CTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAA ATGCTGGCAAAGAAAGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCAEST: gi|208037558|gb|GD833583.1|GD833583
genomic: CTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAAgttagtattt ... tatctgtcagATGCTGGCAAAGAAAGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCA
EST: TGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAA ATGCTGGCAAAGAAAGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCAEST: gi|193629387|gb|FK572889.1|FK572889
genomic: TGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAAgttagtattt ... tatctgtcagATGCTGGCAAAGAAAGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCA
EST: CTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAA ATGCTGGCAAAGAAAGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCAEST: gi|6913675|gb|AW395205.1|AW395205
genomic: CTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAAgttagtattt ... tatctgtcagATGCTGGCAAAGAAAGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCA
EST: CTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAA ATGCTGGCAAAGAAAGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCA
genomic: CTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAAgttagtattt ... tatctgtcagATGCTGGCAAAGAAAGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAGTTTTGTATGATTTGCTGCAGAAAGAGGTCTTAGCCTTGAGGAAAGCTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAAgttagtatttatttgtttttggatattaatcttagatttctaattgataattataatcttagctaactgttgcaatggttgttatctgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG