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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGAACGAAGCACTCCACCATTGCAGAGACAGCATGCCTCCTTACCTAGgcaagtgttggttctacatttggttcaaacttgattaacttcaaaaattggattgccaacttgcacattaaacagccctagtctttttctctagaagatt...

Basic information

species Glycine max
transcript GLYMA05G33980.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 5'ss of exon 9
---TTGATCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGAACGAAGCACTCCACCATTGCAGAGACAGCATGCCTCCTTACCTAGgcaag-tgttggttctacatttg-gttcaaacttgattaactt-caaaaattggattgccaacttgcacattaaacagccctagtctttttctctagaagatt
   |||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||   | ||||| |||||||| ||||| |||||| ||| ||||||     |||      | || | |  |||     ||   |||  ||    | |  | ||||   |       |     |     || | ||| 
GTGTTGATCGGTTTAAGCGACAGTTTGCTCATCTTGAAGAGCATTATGGTAAAGGTGAAAGAAGCACTCCAC---TCCAGAGGCAGCATGCTTCCTTGCCTAGgtaaggtgttggacactcatgcacactgaagcatagttaggggacactgattcaata--tagcagggacatctcatcatgacaaatcctaaaaatataggat-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14991490|gb|BI317163.1|BI317163
EST:     AGCATGCCTCCTTACCTAG                         AGAGCGAGTTTGTGCTCCCAAGGATGAAAGTAAACAAAACAACGATTCTGA
genomic: AGCATGCCTCCTTACCTAGgcaagtgttg ... ctttttgcagAGAGCGAGTTTGTGCTCCCAAGGATGAAAGTAAACAAAACAACGATTCTGA
EST: gi|213603096|gb|DB980992.1|DB980992
EST:     ATTGCAGAGACAGCATGCCTCCTTACCTAG                         AGAGCGAGTTTGTGCTCCCAAGGATGAAAGTAAACAAAACAACCTA-GCTG
genomic: ATTGCAGAGACAGCATGCCTCCTTACCTAGgcaagtgttg ... ctttttgcagAGAGCGAGTTTGTGCTCCCAAGGATGAAAGTAAACAAAACAA-CGATTCTG
EST: gi|192306379|gb|FG996139.1|FG996139
EST:     GGTGAACGAAGCACTCCACCATTGCAGAGACAGCATGCCTCCTTACTTAG                         AGAGCGAGTTTGTGCTCCCAAGGATGAAAGTAAACAAAACAACGATTCTGA
genomic: GGTGAACGAAGCACTCCACCATTGCAGAGACAGCATGCCTCCTTACCTAGgcaagtgttg ... ctttttgcagAGAGCGAGTTTGTGCTCCCAAGGATGAAAGTAAACAAAACAACGATTCTGA
EST: gi|209712400|gb|BW671252.1|BW671252
EST:     GGTGAACGAAGCACTCCACCATTGCAGAGACAGCATGCCTCCTTACCTAG                         AGAGCGAGTTTGTGCTCCCAAGGATGAAAGTAAACAAAACAACGATTCTGA
genomic: GGTGAACGAAGCACTCCACCATTGCAGAGACAGCATGCCTCCTTACCTAGgcaagtgttg ... ctttttgcagAGAGCGAGTTTGTGCTCCCAAGGATGAAAGTAAACAAAACAACGATTCTGA