Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCATTTCAGCAAGCAGACTTCACTGGTTGGAATTTGTGGGCTGCAATCAATGGGCGTCCACTTTTACCATTTAGgtactattgcattcagtttgtttgattattctgtaatctacacacacacttctaatgctatatctgttcctattgggggtgccag

Basic information

species Glycine max
transcript GLYMA05G32900.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32900.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv07s0031g02690.t01 (Vitis vinifera), 5'ss of exon 9
GTTGCATTTCAGCAAGCAGACTTCACTGGTTGGAATTTGTGGGCTGCAATCAATGGGCGTCCACTTTTACCATTTAGgt-actattgcattcagtttgtttgat--tattctgtaatctacaca----cacacttctaatgctatatctg-----ttcctattgggggtgccag---
||||| |||||||||||||||||  ||||||||||| ||||||| ||||||||||  |||||  |  | ||||||||||    |   ||  || |||  |  ||  |||| | |||   |   |      || | ||  |   |  ||||     || | |       ||   |   
GTTGCTTTTCAGCAAGCAGACTTTGCTGGTTGGAATCTGTGGGCAGCAATCAATGACCGTCCTTTACTGCCATTTAGgttggaaactcaaacactttcctcaatagtattatataactaatttaatttttcattactcgtaaaaagtctgcaatatttccaagataaatgtaggaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51334785|gb|CO978651.1|CO978651
EST:     GGTTGGAATTTGTGGGCTGCAATCAATGGGCGTCCACTTTTACCATTTAG                         GTTTCAGAATCTAGGTGAGATGATGACCCTGGGAAGAAACGATGCTGCCAT
genomic: GGTTGGAATTTGTGGGCTGCAATCAATGGGCGTCCACTTTTACCATTTAGgtactattgc ... ggggtgccagGTTTCAGAATCTAGGTGAGATGATGACCCTGGGAAGAAACGATGCTGCCAT