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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTTGAAGGAAATGAGCTACCCCGCTTGGTCTATGTTTCTAGAGAAAAGAGGCCAGGGTTTGATCACCACAAAAAGGCTGGTGCAATGAATGCTCTGgtaagtatcaattcacttttattttggttcagcttcagatgatgttccattgaccttaaataacttgtttttgtaatgatattaaatatgtgaag

Basic information

species Glycine max
transcript GLYMA05G32100.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 9
TGATGTTGAAGGAAATGAGCTACCCCGCTTGGTCTATGTTTCTAGAGAAAAGAGGCCAGGGTTTGATCACCACAAAAAGGCTGGTGCAATGAATGCTCTGgtaagtatcaattcacttttatttt----ggttcagcttca--gatgatgttccattgaccttaaataacttgtttttgtaatgatattaaatat--gtgaag-------------------------------------------------------
|||| |||||||||||||  |||| ||  | || ||||| ||| | || ||||||||||||||||| || |||||||| |||||||| ||||||||||||||||   | || ||| |   |  ||    | | |   |||   | |    || | ||| | |    |   ||  ||||   || |||     | |   ||||                                                        
TGATATTGAAGGAAATGAATTACCTCGTCTAGTTTATGTCTCTCGTGAGAAGAGGCCAGGGTTTGAACATCACAAAAAAGCTGGTGCTATGAATGCTCTGgtaaaccttaaatcaataacaccttcatagatcctttttctttggttgcctttccttgtcttctgtt--tttacttttagtataatacctggtttcgatgaataaacacttggcacagaatttattgagctttgttgctgtttttatgaatatccaag