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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAGgttcaatggttactctttatttgatttttttctaatatctctattagttattgagaacaattcttgcattagaacttcataccccataaaaatatcagcg...

Basic information

species Glycine max
transcript GLYMA05G30850.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30850.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G26440.4 (Arabidopsis thaliana), 5'ss of exon 11
GTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAGgttcaat-ggttactcttta----tttgatttttttctaata-------tctctattagttattgagaacaattcttgcattagaacttcataccccataaaaatatcagcg---------------------------------------
                     ||| || ||  || | |||||||| |||||||||||||||||||||  | | | ||||     ||      |||| |||   |||| |       ||    |||       |  |||| |  | ||  |   | | |||       ||||  |   ||                                       
---------------------AGTTTTCTCTAGAGAGGCATGGCGTTGTGTGTGGCATATGATTCAGAATGACTTGGTTCACGGTTGGGGTCTTGACTTTGCGCTAAGAAAATGCGTCGAGgttaacatacaaatacaacttattcacaaacgcgt-ataattttacaaaacgttttcgaaactaagaagaaacactttttaatgattcaataaacag

upper sequence: GLYMA05G30850.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G24570.1 (Arabidopsis thaliana), 5'ss of exon 10
GTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAGgttcaatggttactct-ttatttgatttttttctaatatctctattagttattgagaacaattcttgcattagaacttcataccccataaaaatatcagcg
 || || |||||||||||||| || || ||| || ||||||||||||| |||||||||||||| ||||||  |   ||||| | |||| |  |   |   | ||||||  ||    | |         ||||||||    || |  |||      ||||| |      
ATTCGTGGAGATAATGGCTCCTGTATTCTCAAGAGATGCATGGCGCTGCGTGTGGCATATGATCCAGgtt--acacttactttattatctattggctccttcatatcttcatataatgtc-----tccttcttgcacct-aattgtatatgaaccaaaaacag-----

upper sequence: GLYMA05G30850.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0106g00570.t01 (Vitis vinifera), 5'ss of exon 2
GTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAGgttcaatggttactctttatttgatttttttctaatatctctattagttattgagaacaattcttgcattagaacttcatacc---ccataaaaatatcagcg
|||||||||||| |||||||| || |||||  || |||||||||| ||||||||||||||| |||||||   ||   ||  ||  | || |   ||   |||  ||||  ||  |      || |  ||  |  || |    |   | ||   | ||   |||  |||  
GTTTGTTGAGATCATGGCTCCTGTATTTTCTAGAGATGCATGGCGGTGTGTGTGGCATATGCTTCAGgt---atatatatcctcaaatttagaattag-taagttctcagttgctccagttgacctgttact--atcaagtttaagtgcctttctatgggaattacag--

upper sequence: GLYMA05G30850.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 11
GTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAGgttcaatggttactctttatttgatttttttctaatatctctattagttattgagaacaattcttgcattagaacttcatacc---ccataaaaatatcagcg
|||||||||||| |||||||| || |||||  || |||||||||| ||||||||||||||| |||||||   ||   ||  ||  | || |   ||   |||  ||||  ||  |      || |  ||  |  || |    |   | ||   |  |   |||  |||  
GTTTGTTGAGATCATGGCTCCTGTATTTTCTAGAGATGCATGGCGGTGTGTGTGGCATATGCTTCAGgt---atatatatcctcaaatttagaattag-taagttctcagttgctccagttgacctgttact--atcaagtttaagtgcctttctgtgggaattgcag--

upper sequence: GLYMA05G30850.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 5'ss of exon 6
GTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAGgttcaatggttactctttatttgatttttttctaatatctctattagtt--attgaga-acaattcttgcattagaacttcataccccataaaaatatcagcg
|||||||||||| |||||||| || |||||  || |||||||||| ||||||||||||||| |||||||   ||   ||  ||  | || |   ||   |||  ||||  ||  |   |||||      | | |    ||  |   || |   |  |   |||  |||  
GTTTGTTGAGATCATGGCTCCTGTATTTTCTAGAGATGCATGGCGGTGTGTGTGGCATATGCTTCAGgt---atatctatcctcaaatttagaattag-taagttctcagttgctccaattgacctgttactatcaagtttaagtgtctt--tctgtgggaattgcag--

upper sequence: GLYMA05G30850.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S129_53V6.1 (Physcomitrella patens), 5'ss of exon 11
GTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAGgttcaatggt-tactctttatttgatttttttctaatatctctattagttattgagaacaattcttgcattagaacttcataccccataaaaatatcagcg-
 ||||||||||| |||||||| |||||||||||||| |||||||| ||  | ||| | || || ||||| || |  | |   ||| | |    | |  |||   |     |      | ||     |    || |||   || || ||    | |     |     |  
ATTTGTTGAGATCATGGCTCCTGTGTTTTCACGAAAAGCATGGCGTTGCATCTGGTACATAATACAGgtacattactatgaccttcaatgatgtgtcctctttaactgagacggaacactggagtgaggattttcatct-aattttattattcttgttcctggttacag

upper sequence: GLYMA05G30850.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S448_20V6.3 (Physcomitrella patens), 5'ss of exon 11
GTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAGgttca--atggttactct-------ttatttgatttttttctaatatctctattagttattgagaacaattcttgcattaga--acttcataccc-cataaaaatatcagcg
|||||||||||| ||||| || |||||||||||||| |||||||| || || ||| | || || ||||| ||  ||    ||| |         |||||||||   ||        | || ||    ||      ||  || |||   |  | || ||| |   |      |||     
GTTTGTTGAGATCATGGCACCCGTGTTTTCACGAAAAGCATGGCGTTGCGTCTGGTACATAATACAGgtacatgatcacaactttgaagaatccatttgatttacctcagtcgagaccatgaggagatgcagtatatgtttccatctaattattttatatctgtacttggttatag---

upper sequence: GLYMA05G30850.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ04271 (Selaginella moellendorffii), 5'ss of exon 6
GTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCA----Ggttcaatg-gttactctttatttgatttttttct---aatatctctattagtta---ttgagaacaatt--cttgcattagaacttcataccccataaaaatatcagcg-----
                     ||| ||||| || || || ||||||||||||||||||||||||||    |  |   ||  |  ||    | | || |||   ||   ||  | |  |   || |   |||  |  | ||  |||  ||||    ||| |||     |    ||| |  |     
---------------------AGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAAATGACTTGGTGCATGGCTGGGGACTAGACTTTGGCCTGCAAAAGTGTGCAACGgtgagctttgccagtactttgctttaattattttttcttacattccattcctatgattgagcag

upper sequence: GLYMA05G30850.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ32148 (Selaginella moellendorffii), 5'ss of exon 7
GTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCA----Ggttcaatg-gttactctttatttgatttttttct---aatatctctattagtta---ttgagaacaatt--cttgcattagaacttcataccccataaaaatatcagcg-----
                     ||| ||||| || || || ||||||||||||||||||||||||||    |  |   ||  |  ||    | | || |||   ||   ||  | |  |   || |   |||  |  | ||  |||  ||||    | | |||          ||| |  |     
---------------------AGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAAATGACTTGGTGCATGGCTGGGGACTAGACTTTGGCCTGCAAAAGTGTGCAACGgtgagctttgccagtactttgctttaattatttttgcttacattcctttcctatgattgagcag