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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAGGAGCCATTGTCACTACTTTCATTGTGTGTTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGGATGTACTCACGAAATGGGGgtaagtatcttctttaattttctgtatattcgctccaagtatgtttgggtggctttgtctcagtcttctctttttggttttgaatgattatgcaactaatttttatgtttgttag

Basic information

species Glycine max
transcript GLYMA05G30210.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os12g07670.1 (Oryza sativa), 5'ss of exon 9
GCGAGGAGCCATTGTCACTACTTTCATTGTGTGTTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGGATGTACTCACGAAATGGGGgtaag----tatcttctttaattttctgtatattcgctccaagtatgtttgggtggctttgtctcagtcttctctttttggttttgaatgattatgcaactaatttttatgtttgttag
||||||  | ||  |||| || ||||||||||| |||||||| |||||||| |||||||| ||||| ||||| ||  | |||||| | ||||| |||| |    | || | ||  | || |  ||| |||        | ||| || |    |   ||||  |  ||    ||  ||||   |   |  | |    |                 
GCGAGGGTCTATCATCACAACCTTCATTGTGTGCTATGCTCTTACATCTTTTATTTCTGGCTATGTCAGTGGTGGCCTCTACTCAAGGAATGGTGgtatggttctttccttttggaattgcattattttcttgtattatttgtctgtgcaattcaatctc--ttctcaaggttctgtttcatagtttcctcctgtca-----------------

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G420310_T01 (Zea mays), 5'ss of exon 9
GCGAGGAGCCATTGTCACTACTTTCATTGTGTGTTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGGATGTACTCACGAAATGGGGgtaagtatcttctttaattttctgtatattcgctccaagtatgtttgggtggctttgtctcagtcttctctttttggttttgaatgattatgcaactaatttttatgtttgttag
|||||| || ||  |||| || ||||||||||| |||||||| |||||||| |||||||| ||||| ||||| ||  | |||||| | ||||| |||| |  ||| |   |||||||| |  ||||    || || ||||||      |  || ||  | | |  | | || ||    ||  |      |     || |           
GCGAGGGGCTATCATCACAACCTTCATTGTGTGCTATGCTCTTACATCTTTTATTTCTGGATATGTTAGTGGTGGTCTTTACTCAAGGAATGGTGgtatggttctgcac-aattttctattaattc---tcatgtttgtttgcacaattcagtttc--tttgcaatctctgtttccatatagtcccttcatggtcttctcc---------

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G087212_T01 (Zea mays), 5'ss of exon 9
GCGAGGAGCCATTGTCACTACTTTCATTGTGTGTTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGGATGTACTCACGAAATGGGGgtaagtatcttctt-taattttctgtatattcgctccaagtatg--tttgggtggctttgtctcagtcttctctttttggttttgaatgattatgcaactaatttttatgtttgttag
||||||||| ||  |||| || ||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||  | || ||| | ||||| |||| |  ||| | | |  || |||             ||| ||   |||    || |   | ||  ||| |||       |||  |||| | |   | ||||                
GCGAGGAGCTATCATCACAACCTTCATTGTGTGCTACGCTCTTACATCTTTCATCTCTGGATATGTTAGTGGTGGTCTCTATTCAAGGAATGGTGgtatgattctgcatgtttttctcttctctactatataaagcatcattttccacggttccatgtcc-tctactcccccacattt-aaatggtaaaaaagctaa----------------

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G026231_T01 (Zea mays), 5'ss of exon 9
GCGAGGAGCCATTGTCACTACTTTCATTGTGTGTTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGGATGTACTCACGAAATGGGGgtaagtatct---------tctttaattttc-tgtatattcgctcca---agtatgtttg-ggtggctttgtctcagtcttctctttttggttttgaatgattatgcaactaatttttatgtttgttag-----------------------------------------------------------------
|||||| || ||  |||| || ||||||||||| |||||||| ||||| || |||||||| ||||| ||||| ||  | |||||| | |  || |||| |  |||         |||||||||||| ||| | || || | |   ||| | ||||   |  || | ||   | | |  |||  || | ||     |||    || || | |  |  ||   | |                                                                 
GCGAGGGGCTATCATCACAACCTTCATTGTGTGCTATGCTCTTACATCGTTTATTTCTGGATATGTTAGTGGTGGTCTTTACTCAAGGAGCGGTGgtatggttctggacacttttctttaattttcatgtttgtttgcgcaattcagtttctttgcaatatctctttccttgacgtaccttcatgttctt---ctatttcaaaaatagtctgcagtttaacttgtcatgtatggaatcctcacctcacaatctatatggcttaccgattgcttcttgaattcatggcag

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 5'ss of exon 9
GCGAGGAGCCATTGTCACTACTTTCATTGTGTGTTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGGATGTACTCACGAAATGGGGgtaagtatcttctttaattttctgtatattcgctccaagtatgtttgggtggctttgtctcagtcttctctttttggttttgaatgattatgcaactaatttttatgtttgttag
| ||||||| || ||||| |||||||| ||||| |||||||| || |||||  | |||||||||||||| || || ||||||||| |||  |||||||  |  |||  |  | ||   | |    | |  | ||| |       |   ||  ||||   ||  ||   |    ||| |||| |  |  |   |                 
GAGAGGAGCAATCGTCACAACTTTCATAGTGTGCTATGCTCTGACTTCTTTTGTCTCTGGTTATGTGAGCGGTGGAATGTACTCAAGAAGCGGGGgta--tgacttactcgacttggcgga----cccctccagtgt-------tactttcctctctaactattcaagtaa--tttaaatgctggtttattcag----------------

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv18s0041g00680.t01 (Vitis vinifera), 5'ss of exon 9
GCGAGGAGCCATTGTCACTACTTTCATTGTGTGTTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGGATGTACTCACGAAATGGGGgtaagtatcttcttta------------attttctgtatatt----cgctccaagt---atgtttgggtggctttgtctcagtcttctctttttggttttgaatga-----ttatgcaactaatttttatgtttgttag----------------------------------------------
| ||||||| |||||||| ||||| || |||||||||||||| ||||| |||||||| |||||||||||||| || |||||||| || ||||| ||||||||  || |  |            | | |  || |  |    | | | || |   ||||  |   ||| | | ||   | ||   | |||  || | |||||     || |  || |  |  ||   | |||                                                 
GAGAGGAGCAATTGTCACGACTTTTATAGTGTGTTATGCTCTTACATCATTCATTTCGGGTTATGTGAGTGGTGGAATGTACTCCCGCAATGGTGgtaagtaatttgtacattatgttgcctcactcttagtcttctgtcaccccctaaatttcatgtacgaaaggcatggcct-gtttttgattcttttattgtcaatgaatctcttctataaatggtcatttcctctgtcttatcagcatttgtttactggtggcttattactgtgtctacttgtcag

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv12s0035g00280.t01 (Vitis vinifera), 5'ss of exon 9
GCGAGGAGCCATTGTCACTACTTTCATTGTGTGTTATGCTCTCACATCTTTCATTTCTGGTTATGTGAGTGGGGGGATGTACTCACGAAATGGGGgtaagtatcttctttaattttctgtatattcgctccaagtat-gtttgggtgg-ctttgtctca-gtcttctctttttggttttgaatg-attatgcaactaattttt-atgtttgttag-------------------------------------------------------------
| ||||||| |||||||| ||||| || || ||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||| ||||| |||| ||| |||| |   |   |||     | |||     | | ||||   ||| |||  |  ||  |||| | |  ||  ||| |  |  |||   ||| || || || || | |  ||                                                              
GAGAGGAGCAATTGTCACAACTTTTATAGTATGTTATGCTCTGACATCATTCATTTCGGGTTATGTGAGTGGTGGGATGTACTCACGCAATGGTGgtatgta-cttcatccgtcaactggtcgatggctaagtttcttgtttttctgggcttccttccatatcttttgtgctttttttgggttatatttaacaagtatttcttgatatgttctactcaactgtctttgtgattgcttctggtgctaaattatatcacttctctgtcatcttgtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193356893|gb|FK319585.1|FK319585
EST:     GGGGGATGTACTCACGAAATGGGG                         GTAAACACTGGATTAAATCCATGATCCTTACAGCTTCTCTGTTCCCATTCA
genomic: GGGGGATGTACTCACGAAATGGGGgtaagtatct ... tgtttgttagGTAAACACTGGATTAAATCCATGATCCTTACAGCTTCTCTGTTCCCATTCA