1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTTACATCTGAAGGGGAAACTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaaccaacctctagtttcactatttacaacccgttcaggtgatggtgagagtgaaaaattgcttgcttctaaagtctaggagtcatgctatgt...
species | Glycine max |
transcript | GLYMA05G30140.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCAEST: gi|192313375|gb|FK005147.1|FK005147
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
EST: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCAEST: gi|208295615|gb|GE091738.1|GE091738
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
EST: TGAC-AAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCAEST: gi|207827157|gb|GD798294.1|GD798294
genomic: TG-CAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
EST: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAACCATCATGAGCCACCCAEST: gi|192313374|gb|FK005146.1|FK005146
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
EST: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG GTGAGGAAAGTTGGEST: gi|193656048|gb|FK606678.1|FK606678
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGG
EST: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCAEST: gi|14989997|gb|BI315670.1|BI315670
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCA
EST: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCAEST: gi|207712773|gb|GD693397.1|GD693397
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
EST: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG GTGAGGAAGGTTGGCAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCAEST: gi|207819023|gb|GD790399.1|GD790399
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
EST: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCAEST: gi|7233927|gb|AW569269.1|AW569269
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
EST: CTGCAAAGTGTAAAAAAGTTGTTTGTGATTCATCATATTTGCCTGTCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCAEST: gi|6915949|gb|AW397479.1|AW397479
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
EST: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG GTGAGGAAGGTTGGTANGGTTGCAAGGGCGATAGCCATCATGAGCCACCCAEST: gi|4291506|gb|AI437629.1|AI437629
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
EST: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCAEST: gi|208156728|gb|GD957262.1|GD957262
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
EST: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCAEST: gi|24205309|gb|BU964562.1|BU964562
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
EST: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCAEST: gi|14125915|gb|BG790353.1|BG790353
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
EST: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCAEST: gi|120533574|gb|EH261707.1|EH261707
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
EST: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGGGCCGATAGCCATCATGAGCCACCCEST: gi|208226200|gb|GE025527.1|GE025527
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGC-GATAGCCATCATGAGCCACCC
EST: CTGCAAAGTGT-AAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
genomic: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGGGCGATAGCCATCATGAGCCACCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTTACATCTGAAGGGGAAACTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAGgtattagaaaccaacctctagtttcactatttacaacccgttcaggtgatggtgagagtgaaaaattgcttgcttctaaagtctaggagtcatgctatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG