Sequence
atgc intronic sequence ATGC exonic sequenceTGGATGGAAACATTGCAATATGGGATACCCGTTTGGGGAAGTCACCAGCTGCATCTTTTAAGGCACATAATGCTGATGTGAATGTAATGTCATGGAACAGgtattaatacattaattctatggtgttccatcaactgctattctagatctcttcatcactttgttcttatattatactgagcag
Basic information
species | Glycine max |
transcript | GLYMA05G28040.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G28040.2 (Glycine max), 5'ss of exon 9
lower sequence: AT2G19540.1 (Arabidopsis thaliana), 5'ss of exon 8
TGGATGGAAACATTGCAATATGGGATACCCGTTTGGGGAAGTCACCAGCTGCATCTTTTAAGGCACATAATGCTGATGTGAATGTAATGTCATGGAACAGgtattaatacattaattctatggtgttccatc--aactgctattctagatctcttcatcactttgttcttatattatactgagcag-----
||||||| | ||||| | ||||||| || | |||||||| || || |||||| ||||||||||| || ||||||||||| || ||||||||||||| | | | || || | | || || | || | || | | | | ||||| || | |
TGGATGGGAGTGTTGCAGTCTGGGATATTCGACTTGGGAAGTCCCCTGCACTATCTTTCAAGGCACATAACGCAGATGTGAATGTCATCTCATGGAACAGgttcttgtcccactatgctgtataacttaattctgtttggttttgtgcttcccacgaatgttgtagtcttaatttttcttctttcatgaag
upper sequence: GLYMA05G28040.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv11s0016g02270.t01 (Vitis vinifera), 5'ss of exon 8
TGGATGGAAACATTGCAATATGGGATACCCGTTTGGGGAAGTCACCAGCTGCATCTTTTAAGGCACATAATGCTGATGTGAATGTAATGTCATGGAACAGgtattaatacattaattctatggtgttccatca-actgctattctagatctcttcat---cactttgttcttatattatactgagcag----------
||||||| || ||||||||||||||||| ||| | || | ||||||||| || || ||||| ||||||||||| ||||| ||||| ||||||||||||||| | | || ||||| || | | || | | || |||| ||| | | | || |||| | | |
TGGATGGGAATATTGCAATATGGGATACACGTCTAGGAAGGTCACCAGCAGCTTCCTTTAAAGCACATAATGCAGATGTCAATGTTTTGTCATGGAACAGgtgcttaaaccttaatat--tgctccttgattgcagtacttttctgtgcctcatgctatatgcagtgaccttacttggtcattcctgattcctattagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17023928|gb|BM094962.1|BM094962EST: GCATCTTTTAAGGCACATAATGCTGATGTGAATGTAATGTCATGGAACAG GTTGGCTAGTTGTATGTTGGCCTCTGGGAGTGATGATGGGACTATTTCTAT
genomic: GCATCTTTTAAGGCACATAATGCTGATGTGAATGTAATGTCATGGAACAGgtattaatac ... tactgagcagGTTGGCTAGTTGTATGTTGGCCTCTGGGAGTGATGATGGGACTATTTCTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGATGGAAACATTGCAATATGGGATACCCGTTTGGGGAAGTCACCAGCTGCATCTTTTAAGGCACATAATGCTGATGTGAATGTAATGTCATGGAACAGgtattaatacattaattctatggtgttccatcaactgctattctagatctcttcatcactttgttcttatattatactgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA