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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTATTGCTGGAGAAGGGTTGATTGTAACAGCAGGGGCTATAGATTGTCACGTGCATTATATATGCCCTCAATTAGTAGATGAGGCCATATCAAGCGgtgagttttacaagtagaagcaatttatacagaaagatttcattaccgcaggtatcttttaaatattaacgaatggtcaagacaggttcttttactttct...

Basic information

species Glycine max
transcript GLYMA05G27840.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27840.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G67550.1 (Arabidopsis thaliana), 5'ss of exon 9
GAAGTTATTGCTGGAGAAGGGTTGATTGTAACAGCAGGGGCTATAGATTGTCACGTGCATTATATATGCCCTCAATTAGTAGATGAGGCCATATCAAGCGgtgagttttacaagtagaagcaatttatacagaaagatttcattaccgcaggtatcttttaaatattaacgaatggtcaagacaggttcttttactttct
|| |||||||||||||||||  |||||||||| ||||| ||||| |||||||| || ||||  ||||| |||||||| ||  |||| ||  | |||||||||||||     |    ||   ||  |||| || |  | ||     |   |      |  ||| |||   |                              
GAGGTTATTGCTGGAGAAGGAATGATTGTAACTGCAGGAGCTATTGATTGTCATGTACATTTCATATGTCCTCAATTGGTGTATGAAGCAGTGTCAAGCGgtgagtagagtagcctgactgaa--tataaagcataagtttgcctctaaa-----ttcataagtatatgcag----------------------------

upper sequence: GLYMA05G27840.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 9
GAAGTTATTGCTGGAGAAGGGTTGATTGTAACAGCAGGGGCTATAGATTGTCACGTGCATTATATATGCCCTCAATTAGTAGATGAGGCCATATCAAGCGgtgagtttt----acaagtagaagcaatttatacagaaagatttcattaccgcaggtatcttttaaatattaacgaatggtcaagacaggttcttttactttct
|| || || |||||||||||  ||||||| || |||||||| ||||| || || ||||| | ||||||||||||||| |   |||| ||||||||||| |||||| |||    |  | | |||| |  ||       |||  || |||    ||   |  | ||| |   ||  | |    |  | || ||  |  |  |    
GAGGTCATCGCTGGAGAAGGAATGATTGTGACTGCAGGGGCCATAGACTGCCATGTGCACTTTATATGCCCTCAATTGGCCTATGAAGCCATATCAAGTGgtgagatttctgcatgactggaagtaccttgcctgtgaagtgttgattttgtcattaacatgttagaatgtattgcaattgcttggcatgtcttgatcat----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298178981|gb|HO024716.1|HO024716
EST:     TCACGTGCATTATATATGCCCTCAATTAGTAGATGAGGCCATATCAAGCG                         GCATCACAACATTAGTGGGAGGTGGAACCGGACCAACTGCTGGAACACGTG
genomic: TCACGTGCATTATATATGCCCTCAATTAGTAGATGAGGCCATATCAAGCGgtgagtttta ... ttgtatgtagGCATCACAACATTAGTGGGAGGTGGAACCGGACCGACTGCTGGAACACGTG
EST: gi|7147068|gb|AW508990.1|AW508990
EST:     TCACGTGCATTATATATGCCCTCAATTAGTAGATGAGGCCATATCAAGCG                         GCATCACAACATTAGTGGGAGGTGGAACCGGACCGACTGCTGGAACACGTG
genomic: TCACGTGCATTATATATGCCCTCAATTAGTAGATGAGGCCATATCAAGCGgtgagtttta ... ttgtatgtagGCATCACAACATTAGTGGGAGGTGGAACCGGACCGACTGCTGGAACACGTG