Sequence
atgc intronic sequence ATGC exonic sequenceTTGAAGACTGAGTGTGGCAGCCAGTTCACAAACAAACTGGAAGGAATGTTTAAGgtatacatgtttcttcttggagtcaatttttaatttcagagatttgattcaaattgtggacttctgttcaatagatgttttcttataatttttgtcacat...
Basic information
species | Glycine max |
transcript | GLYMA05G27240.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G27240.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G46210.1 (Arabidopsis thaliana), 5'ss of exon 9
TTGAAGACTGAGTGTGGCAGCCAGTTCACAAACAAACTGGAAGGAATGTTTAAGgtatacatgtttcttcttggagtcaatttttaatttcagagatttgattcaaattgtggacttctgttcaatagatgttttcttataat-ttttgtcacat------
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CTTAAGACTGAGTGTGGTAGCCAGTTTACAAACAAGCTCGAAGGGATGTTCAAGgtatcctttcttctccttc---tctatattcaaa---aaagatgttggtcgt-ttaagttttactaaggaacaaacttaatgatcttatattttgttacgttttacg
upper sequence: GLYMA05G27240.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 9
TTGAAGACTGAGTGTGGCAGCCAGTTCACAAACAAACTGGAAGGAATGTTTAAGgtatacatgtttcttcttggagtcaatttttaatttcagagatt-tgattcaaattgtggacttctgttcaatagatgttttcttataatttttgtcacat----
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TTGAAGACTGAATGCGGAAGTCAGTTTACTAACAAACTTGAAGGAATGTTTAAGgtgtgcttctttgttcctt---tcaatggtttggttcaggaattgtgactaaggtttttaa--tctgtttggaaggtctggtcacacacacacacacacacacac
upper sequence: GLYMA05G27240.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S70_181V6.1 (Physcomitrella patens), 5'ss of exon 9
TTGAAGACTGAGTGTGGCAGCCAGTTCACAAACAAACTGGAAGGAATGTTTAAGgtatacatgtttcttcttg---gagtcaatttttaattt---cagagatttgattcaaattgtggacttctg--ttcaatagatgttttcttataatttttgtcacat-----------------------------------------------------------
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CTCAAGACGGAATGTGGGAGTCAGTTCACAAACAAACTGGAAGGAATGTTCAAGgtatgagtcttctctcctgataggtgcaaattctgttctgctcgatgcctttgcttcttttgttaccttcagcttttggtggttggtttacactggcttct-caacactcagttttcttgcgcttagggtgatggattttaattgttgttgtcttttacttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31561323|gb|CD487161.1|CD487161EST: AGACTGAGTGTGGCAGCCAGTTCACAAACAAACTGGAAGGAATGTTTAAG GACATTGAATTATCAAAAGAAATAAATGATTCATTCAAACAGTCATCACAG
genomic: AGACTGAGTGTGGCAGCCAGTTCACAAACAAACTGGAAGGAATGTTTAAGgtatacatgt ... tgtaaatcagGACATTGAATTATCAAAAGAAATAAATGATTCATTCAAACAGTCATCACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGAAGACTGAGTGTGGCAGCCAGTTCACAAACAAACTGGAAGGAATGTTTAAGgtatacatgtttcttcttggagtcaatttttaatttcagagatttgattcaaattgtggacttctgttcaatagatgttttcttataatttttgtcacat
- - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - AAGGAA