1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATAATGCCAGATAAAAATGTCAACCCAGATGGTCGGTCCTTAGCTCGTTTTCGTAGAATTCCGGATTTTGAGGATGAAGATTATTCTGACTAGCTGCCTGgtaattgattttttttttctcgttctgttttaaaataatttttactgtccaatctctggtaataatgatgcatgttgttaatttcag
species | Glycine max |
transcript | GLYMA05G26640.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCGTAGAATTCCGGATTTTGAGGATGAAGATTATTCTGACTAGCTGCCTG AGGCTGATAGTGAAAGATGTCATGGTGGTTGTACTACATGATCATGATCCAEST: gi|17021394|gb|BM092428.1|BM092428
genomic: TCGTAGAATTCCGGATTTTGAGGATGAAGATTATTCTGACTAGCTGCCTGgtaattgatt ... ttaatttcagAGGCTGATAGTGAAAGATGTCATGGTGGTTGTACTACATGATCATGATCCA
EST: TCGTAGAATTCCGGATTTTGAGGATGAAGATTATTCTGACTAGCTGCCTG AGGCTGATAGTGAAAGATGTCATGGTGGTTGTACTACATGATCATGATCCAEST: gi|192320859|gb|FK013053.1|FK013053
genomic: TCGTAGAATTCCGGATTTTGAGGATGAAGATTATTCTGACTAGCTGCCTGgtaattgatt ... ttaatttcagAGGCTGATAGTGAAAGATGTCATGGTGGTTGTACTACATGATCATGATCCA
EST: TCGTAGAATTCCGGATTTTGAGGATGAAGATTATTCTGACTAGCTGCCTG AGGCTGATAGTGAAAGATGTCATGGTGGTTGTACTACATGATCATGATCCAEST: gi|208327869|gb|GE124617.1|GE124617
genomic: TCGTAGAATTCCGGATTTTGAGGATGAAGATTATTCTGACTAGCTGCCTGgtaattgatt ... ttaatttcagAGGCTGATAGTGAAAGATGTCATGGTGGTTGTACTACATGATCATGATCCA
EST: TCGTAGAATTCCGGATTTTGAGGATGAAGATTATTCTGACTAGCTGCCTG AGGCTGATAGTGAAAGATGTCATGGTGGTTGTACTACATGATCATGATCCA
genomic: TCGTAGAATTCCGGATTTTGAGGATGAAGATTATTCTGACTAGCTGCCTGgtaattgatt ... ttaatttcagAGGCTGATAGTGAAAGATGTCATGGTGGTTGTACTACATGATCATGATCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAATGCCAGATAAAAATGTCAACCCAGATGGTCGGTCCTTAGCTCGTTTTCGTAGAATTCCGGATTTTGAGGATGAAGATTATTCTGACTAGCTGCCTGgtaattgattttttttttctcgttctgttttaaaataatttttactgtccaatctctggtaataatgatgcatgttgttaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC