1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGATGGTTTGACAAAGACAGATGAACTGGTTTTTGTTTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGTgtatccttcaaatataagcttttgcatagtagtgtgcatgataaatgaatgggtcaaattttctagtcctctaaatgtcattttacttcattggcctgga...
species | Glycine max |
transcript | GLYMA05G26100.1 |
intron # | 9 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: ATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGT ATCCTTGTACCACTTCCAGAACCAGTAGCAAGAAGAGCAATGTTCGAGGAAEST: gi|51335898|gb|CO979764.1|CO979764
genomic: ATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGTgtatccttca ... aaattgaaagATCCTTGTACCACTTCCAGAACCAGTAGCAAGAAGAGCAATGTTCGAGGAA
EST: ATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGT ATCCTTGTACCACTTCCAGAACCAGTAGCAAGAAGAGCAATGTTCGAGGAAEST: gi|192328599|gb|FK023575.1|FK023575
genomic: ATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGTgtatccttca ... aaattgaaagATCCTTGTACCACTTCCAGAACCAGTAGCAAGAAGAGCAATGTTCGAGGAA
EST: ATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGT ATCCTTGTACCACTTCCAGAACCAGTAGCAAGAAGAGCAATGTTCGAGGAAEST: gi|9259433|gb|BE347580.1|BE347580
genomic: ATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGTgtatccttca ... aaattgaaagATCCTTGTACCACTTCCAGAACCAGTAGCAAGAAGAGCAATGTTCGAGGAA
EST: ATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGT ATCCTTGTACCACTTCCAGAACCAGTAGCAAGAAGAGCAATGTTCGAGGAA
genomic: ATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGTgtatccttca ... aaattgaaagATCCTTGTACCACTTCCAGAACCAGTAGCAAGAAGAGCAATGTTCGAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGGTTTGACAAAGACAGATGAACTGGTTTTTGTTTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGTgtatccttcaaatataagcttttgcatagtagtgtgcatgataaatgaatgggtcaaattttctagtcctctaaatgtcattttacttcattggcctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC