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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAGGATGTTGAAGGAGTTGAACTGTGTGGAACTTTGAAAAATGTTGTGGCCATAGCAGCAGgtttgctttacagtatatgcactttgtcctctcccttttttctatttttgcaaacaatcaaggaatgacacacaaatgggacag

Basic information

species Glycine max
transcript GLYMA05G24070.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G24070.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g74000.1 (Oryza sativa), 5'ss of exon 6
GTTCAGGATGTTGAAGGAGTTGAACTGTGTGGAACTTTGAAAAATGTTGTGGCCATAGCAGCAGgttt-gctttacagtatatgcactttgtcctctcccttttttctatttttgcaaacaatcaaggaatgacacacaaatgggacag
||  ||||| |||||||||||||| | ||||||||  |||||||||| |||||||| |||||||||||  | |    ||  ||      |   |  |   |  |||| | ||||   || | | |||  |||  |  ||| | | |   
GTAGAGGATATTGAAGGAGTTGAATTATGTGGAACACTGAAAAATGTCGTGGCCATTGCAGCAGgttttacatgtttgttaatttgtagtagtcattgtttcctttcaaatttt---aatatttaagtgatggaat-caacttgcag--

upper sequence: GLYMA05G24070.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0219g00280.t01 (Vitis vinifera), 5'ss of exon 6
GTTCAGGATGTTGAAGGAGTTGAACTGTGTGGAACTTTGAAAAATGTTGTGGCCATAGCAGCAGgtttgctttacagtatatgcactttgtcctctcccttttttctatttttgcaaacaatcaaggaatgacacacaaatgggacag-----------------------------
|| |||||||| ||||| |||||||| ||||||||  |||| |||||||||||||| |||||||||||| ||    || |  |   ||| |  | |   ||| |  |  | |      |   |||    |||     ||||||   |                              
GTCCAGGATGTGGAAGGCGTTGAACTATGTGGAACCCTGAAGAATGTTGTGGCCATTGCAGCAGgtttgtttgtttgtttg-gtgtttttttttttttttttctagttctctgttttcctcacaaaatttgatgagtaaatggaggaattgatctgaatttctcttaaatataacag