1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTTCAATGAAATGCAACAAAGATATGGTCCCTACAGGTCTCCGGGAGGAGAGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCATgtgggtacctcctcaattaattttactttagctcacacattaaatagacataagaaaatatagaaacacgagccacccactattattaccatcattgaaa...
species | Glycine max |
transcript | GLYMA05G18170.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCAT TTTCCCAGAAGCAGCATTGGAGEST: gi|208163388|gb|GD959780.1|GD959780
genomic: AGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCATgtgggtacct ... gtaaatgtagTTTCCCAGAAGCAGCATTGGAG
EST: TTCACCCACCAAATTTTCAT TTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCAEST: gi|193706774|gb|FK646337.1|FK646337
genomic: TTCACCCACCAAATTTTCATgtgggtacct ... gtaaatgtagTTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: AGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCATT TTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCEST: gi|208107377|gb|GD907964.1|GD907964
genomic: AGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCA-Tgtgggtacct ... gtaaatgtagTTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATC
EST: AGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCAT TTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCAEST: gi|193685246|gb|FK626196.1|FK626196
genomic: AGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCATgtgggtacct ... gtaaatgtagTTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: AGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCAT TTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCAEST: gi|207827545|gb|GD800754.1|GD800754
genomic: AGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCATgtgggtacct ... gtaaatgtagTTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: AGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCAT TTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCAEST: gi|8402153|gb|BE057787.1|BE057787
genomic: AGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCATgtgggtacct ... gtaaatgtagTTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: GTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCAT TTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCAEST: gi|207844380|gb|GD814425.1|GD814425
genomic: GTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCATgtgggtacct ... gtaaatgtagTTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: CGCACATTCACCCACCAAATTTTCAT TTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCAEST: gi|7283390|gb|AW595998.1|AW595998
genomic: CGCACATTCACCCACCAAATTTTCATgtgggtacct ... gtaaatgtagTTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: AGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCAT TTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCAEST: gi|208181585|gb|GD974166.1|GD974166
genomic: AGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCATgtgggtacct ... gtaaatgtagTTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: AGTCTCAAATGCTTCAAAATTTTGCGCACACTCACCCACCAAATTTTCAT TTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCAEST: gi|193435204|gb|FK399858.1|FK399858
genomic: AGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCATgtgggtacct ... gtaaatgtagTTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: AGTCTCAAATGCTTCAAAATTTTGCGCACATTCATCCACCAAATTTTCAT TTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATTCTTTCATTEST: gi|16280595|gb|BI944044.1|BI944044
genomic: AGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCATgtgggtacct ... gtaaatgtagTTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGAT-CTTTCATT
EST: AGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCAT TTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCN
genomic: AGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCATgtgggtacct ... gtaaatgtagTTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATC-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCAATGAAATGCAACAAAGATATGGTCCCTACAGGTCTCCGGGAGGAGAGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCATgtgggtacctcctcaattaattttactttagctcacacattaaatagacataagaaaatatagaaacacgagccacccactattattaccatcattgaaa
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