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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGTATTTGAATTTGCAATCAAAGGCTCGGATGAAGAAAAGATATCTGCTGCTACCATTCTTTGTGGGGCATCTTTAGTACGTGGTTGGAATGTGCAGgtgatcccaacaccattttaatttgattttctccataattagaaaatcatactagactacacttcttctttgtttttttttaaataatttattttgtttgcttccccttctttttcctttttttttttctttcatgattataatgattatcattgtttgcag

Basic information

species Glycine max
transcript GLYMA05G09220.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G09220.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv07s0104g00390.t01 (Vitis vinifera), 5'ss of exon 9
GAAAGTATTTGAATTTGCAATCAAAGGCTCGGATGAAGAAAAGATATCTGCTGCTACCATTCTTTGTGGGGCATCTTTAGTACGTGGTTGGAATGTGCAGgtga-tcccaac--accattttaatttgattttctccataat-tagaaaatcatactagactacacttcttctttgtttttttttaa-------ataatttattttgtttgcttccc-------cttctttttcctttttttttttctttcatgattataat--gattatcattgtttgcag
|||| | | |||  | ||| |||| || || ||||| || ||||||||||||||  | |||||||||||||| ||| |||| |||||||||||| | ||||| | | ||||   |   ||||  || | ||| ||  | |    |     |  |  ||   | | ||| | |||  || |  |  ||       ||   | ||| | ||||  | |        | |||||||| ||||  |   | | | |  | |||| |  | |     ||| ||||||
GAAAATCTATGAGATAGCAGTCAATGGTTCAGATGATGAGAAGATATCTGCTGCAGCAATTCTTTGTGGGGCTTCTCTAGTTCGTGGTTGGAATATACAGgtaaatgccaaggaagtgtttttgttgggtttacttaaaagggcattgtgtttttttaatattctcttttgcttgattatcatggaagagcagtatgtctgattatttttgtcttctgaagtcacctctttttctttttgatccatttgttacaagtatattttggtctatgttgcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193534270|gb|FK491567.1|FK491567
EST:     CTGCTACCATTCTTTGTGGGGCATCTTTAGTACGTGGTTGGAATGTGCAG                         GAACACATAGTATTTTTCATCATAAAGATGCTTTCACCTCCAGTTCCTCCT
genomic: CTGCTACCATTCTTTGTGGGGCATCTTTAGTACGTGGTTGGAATGTGCAGgtgatcccaa ... ttgtttgcagGAACACATAGTATTTTTCATCATAAAGATGCTTTCACCTCCAGTTCCTCCT
EST: gi|208163974|gb|GD959330.1|GD959330
EST:     CGTGGTTGGAATGTGCAG                         GAACACATAGTATTTTTCATCATAAAGATGCTTTCACCTCCAGTTCCTCCT
genomic: CGTGGTTGGAATGTGCAGgtgatcccaa ... ttgtttgcagGAACACATAGTATTTTTCATCATAAAGATGCTTTCACCTCCAGTTCCTCCT