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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCACATTCTGATTTAGATGATGCTGGAGAGATTGTTACTCCAACTCCTAGAGTAAAACGAATCTTGTCAAGTCCACGCTGCCTTCCACATATTGCACAGgtaattttaggagttgttcattttttaatctgccacgttggaaaatattgacatttgttgagagtaatgacttgcatctttctaagtagcatttctttct...

Basic information

species Glycine max
transcript GLYMA05G08040.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G08040.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os10g42439.1 (Oryza sativa), 5'ss of exon 9
GGCACATTCTGATTTAGATGATGCTGGAGAGATTGTTACTCCAACTCCTAGAGTAAAACGAATCTTGTCAAGTCCACGCTGCCTTCCACATATTGCACAGgtaattttaggagttgttcattt-tttaatctgccacgttggaaaatattgacatttgttga-------gagtaatgacttg--catctttctaagtagcatttctttct
 |||||||||||| | |||||||| |||||||| || || ||||||||||| || ||||| || |||||||||||| | |||||||| ||| |||| |||||| ||     ||||    ||||  ||   ||  || |  || |    ||    | || |||          | || | |||  ||| | | |||| ||   ||      
TGCACATTCTGATCTTGATGATGCAGGAGAGATAGTGACACCAACTCCTAGGGTGAAACGTATATTGTCAAGTCCAAGATGCCTTCCTCATGTTGCTCAGgtactt-----agttccaaatttgcttcccctatcatgcggggactagtttgtgtatgatgacctagctatattattatttggccatgtgtataagaagagcttt-----

upper sequence: GLYMA05G08040.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G049288_T01 (Zea mays), 5'ss of exon 9
GGCACATTCTGATTTAGATGATGCTGGAGAGATTGTTACTCCAACTCCTAGAGTAAAACGAATCTTGTCAAGTCCACGCTGCCTTCCACATATTGCACAGgtaattttagg----agttgttcatt-ttttaatctgccacgttggaaaatattgacatttgttgagagtaatgacttgcatctttctaagtagcatttctttct
 ||||  || ||| | |||||||| || || || || |||||||||||||| || ||||| || |||||||||||| | |||||||| ||| | || ||||| || |   |    |  ||||   | | ||  ||  |||  |  |   || |||     |||  | |   |  || |  |  |  |  |||| | |    | | 
TGCACGGTCCGATCTTGATGATGCAGGTGAAATAGTAACTCCAACTCCTAGGGTGAAACGTATATTGTCAAGTCCAAGATGCCTTCCTCATGTGGCCCAGgttatctctagcttcaagtgtttgctatctttttccaccatataagtggatgttggagactgt--ataagtacaacataaaagtgac--agtatcttagtctac-

upper sequence: GLYMA05G08040.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv11s0016g04420.t01 (Vitis vinifera), 5'ss of exon 9
GGCACATTCTGATTTAGATGATGCTGGAGAGATTGTTACTCCAACTCCTAGAGTAAAACGAATCTTGTCAAGTCCACGCTGCCTTCCACATATTGCACAGgtaattttaggagttgttcattttttaatctgccacgttggaaaatattgacatttgttgagagtaatgacttgcatctttctaagtagcatttctttct-
 |||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||| || || ||||||||||| |||||||| |||   |||||||||     ||     | |    ||    |    ||   | | || | |    | | | |||||  | |  || |  |         
TGCACATTCAGATTTAGATGATGCTGGTGAGATAGTTACCCCAACTCCTAGAGTGAAACGGATCTTGTCAAGTCCTCGTTGTCTTCCACATATCGCACAGgtgattcctggagttgttttgacttatgatttctgtattattcatagctgttgtctatttaaaaatttaattagcatccatgtttgt-gtgtggggaaggg