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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGACACAACAAGTGCAAGATATCTTGAACACAAAAAAGTTTGGGGATATTGCATTCAGAGACAAGGATTTCAAAAATGCAATTGAGTATTACTCTAAGgtagattctctgtttcacctttttttaactggttttggcttattggttgcctcaaaatgttcataatctcaatatgttcttaaggtatattcctattctgaagtcatagtctgagccctttatttctttgcattaagcag

Basic information

species Glycine max
transcript GLYMA05G06140.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os10g42110.1 (Oryza sativa), 5'ss of exon 9
ATGGACACAACAAGTGCAAGATATCTTGAACACAAAAAAGTTTGGGGATATTGCATTCAGAGACAAGGATTTCAAAAATGCAATTGAGTATTACTCTAAGgtagattctctgtttcacctttttttaactg-gttttggcttattggttgcctcaaaatgttcataatctcaatatgttcttaaggtatattcctattctgaagtcatagtctgagccctttatttctttgcattaagcag
|||||| || ||||||||||| ||  |||| || || |||||||| || |||||||| ||||||||||||||||| | ||||||||| || ||||| ||||||   ||  |||||   |||   |   ||  | |   |    || |     |  | || ||  |  || | || ||||  |  |  | |    | || || ||                                     
ATGGACTCAGCAAGTGCAAGAGATGCTGAATACCAAGAAGTTTGGTGACATTGCATTTAGAGACAAGGATTTCAAGACTGCAATTGACTACTACTCCAAGgta---tcattgttttctcttacctaggctatgctaccgtacctttgcaatgttgacattttgct--tcacgat-tgtttgtttgacacaagt-tgttttggagctt----------------------------------

upper sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G054634_T01 (Zea mays), 5'ss of exon 9
ATGGACACAACAAGTGCAAGATATCTTGAACACAAAAAAGTTTGGGGATATTGCATTCAGAGACAAGGATTTCAAAAATGCAATTGAGTATTACTCTAAGgtag-attctctgtttcacctttttttaactggttttggcttattggttgcctcaaaatgttcataatctcaatatgttcttaaggtatattcctattctgaagtcatagtctgagccctttatttctttgcattaagcag
|||||| || ||||||||||| ||  |||||||||| |||||||| || |||||||| |||||||||||||| || | ||||||||| || ||||| ||||||  |   ||  | |   |  ||  |   |  || |||        ||  | || |  ||     ||| | || |     | |         ||  ||  |||||| ||                               
ATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAGAAGTTTGGTGACATTGCATTTAGAGACAAGGATTTTAAGACTGCAATTGACTACTACTCCAAGgtatcaacatccctgttctccattcatgcgtaattatggtaggaaacttatcacagagagtc----atc-cgatgtaactgtcaaa-------ctggtcacaagtcaaagcg-----------------------------

upper sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G169080_T01 (Zea mays), 5'ss of exon 9
ATGGACACAACAAGTGCAAGATATCTTGAACACAAAAAAGTTTGGGGATATTGCATTCAGAGACAAGGATTTCAAAAATGCAATTGAGTATTACTCTAAGgtag-attctctgtttcacctttttttaactggttttggcttattggttgcctcaaaatgttcataatctcaatatgttcttaaggtatattcctatt-ctgaagtcatagtctgagccctttatttctttgcattaagcag
|||||| || ||||||||||| ||  |||||||||| |||||||| || |||||||| |||||||||||||| || | ||||||||| || || || ||||||  |   |   | |   || ||||    |  || |||     | |  | ||     || | |       |  | | ||  ||  ||| |  | ||| || | | | ||                                
ATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAGAAGTTTGGTGACATTGCATTTAGAGACAAGGATTTTAAGACTGCAATTGACTACTATTCCAAGgtatcagcatacctgttctctattttcgcgtaattatgg-----taggagactaggggtgctaacgg----atcacgatccaaa--tatttcacaatttcttagggcctaa-------------------------------

upper sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G46570.1 (Arabidopsis thaliana), 5'ss of exon 7
ATGGACACAACAAGTGCAAGATATCTTGAACACAAAAAAGTTTGGGGATATTGCATTCAGAGACAAGGATTTCAAAAATGCAATTGAGTATTACTCTAAGgtagattctctgtttcacctttttttaactggttttggcttattggttgcctcaaaatgttcataatctcaatatgttcttaaggtatattcctattctgaagtcatagtctgagccctttatttctttgcattaagcag
|||||||||||||||||| || ||  | |||||||||||||| ||||| ||||| |||||||||||||||||||| ||  ||||||| || ||||| |||||              |     |   |||   |      || | |||   |  |||   ||  ||| |||  |||     || |||   ||||                                               
ATGGACACAACAAGTGCAGGAGATGCTTAACACAAAAAAGTTCGGGGACATTGCTTTCAGAGACAAGGATTTCAAGAACTCAATTGAATACTACTCCAAGgtgag-----------aggaaatagcaacaaatccataattctcggtgttcgaaaagaatttctaacctctgtat----ctatggt---ttccag---------------------------------------------

upper sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv02s0012g01140.t01 (Vitis vinifera), 5'ss of exon 9
ATGGACACAACAAGTGCAAGATATCTTGAACACAAAAAAGTTTGGGGATATTGCATTCAGAGACAAGGATTTCAAAAATGCAATTGAGTATTACTCTAAGgta--gattctctgtttcacctttttttaactggttttggcttattggttgcctcaaaatgttcataatctcaatatgttcttaaggtatattcctattctgaagtcatagtctgagccctttatttctttgcattaagcag
||||||||||||||||||||| || ||||||||||| || || |||||||||||||| || |||||||||||||| | ||||||||| ||||| || ||||||  |   ||    |  || | | || | |  |  |||| |  | | ||   | |||||| |  |  |     ||     | |  | ||||  ||  |                                           
ATGGACACAACAAGTGCAAGAGATGTTGAACACAAAGAAATTCGGGGATATTGCATTTAGGGACAAGGATTTCAAGAGTGCAATTGATTATTATTCAAAGgtattgtcccttcactgaacttgtcttcatcaagcattgggtggtggatt-tttgaaaatgatatttgttgagttaccaattgattggatatctctccttg-----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14011822|gb|BG726744.1|BG726744
EST:     TTGCATTCAGAGACAAGGATTTCAAAAATGCAATTGAGTATTACTCTAAG                         TTGGTGGTTATGATGTCTGTTCCTTCTGCTACTGTGTTTGCAAGGAGAGCC
genomic: TTGCATTCAGAGACAAGGATTTCAAAAATGCAATTGAGTATTACTCTAAGgtagattctc ... cattaagcagTTGGTGGTTATGATGTCTGTTCCTTCTGCTACTGTGTTTGCAAGGAGAGCC