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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAGTGGAGCTATTTGGGGATGAGGAGAATAATCGTAAAGCTGTTGCATGTTTAAATGTGATGGCTACTCGGATTGCTACAGTTTTTGCTTCATTAAGAgtatgtagtcaatgccttgctcttttatcatagaaattaaaaaattgtaatcaatgttctataattgttctaaaattgtaatcaatgttctgtaaatgtttctctag

Basic information

species Glycine max
transcript GLYMA05G03970.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G03970.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G12360.1 (Arabidopsis thaliana), 5'ss of exon 8
TTTAGTGGAGCTATTTGGGGATGAGGAGAATAATCGTAAAGCTGTTGCATGTTTAAATGTGATGGCTACTCGGATTGCTACAGTTTTTGCTTCATTAAGAgtatgtagtcaatgccttgctcttttatcatagaaattaaaaaattgtaatcaatgttctataattgttctaaa-attgtaatcaatgttctgtaaatgtttctctag
||||| ||| || ||||| |||||||| | |  ||| ||||  | ||| || || |||||||||||| |||| ||||||||||| |||||||| ||  | |||   | ||| |    | | |  ||| |||    | || |  ||    || | | ||||  |||  || |  |  ||  |                           
TTTAGAGGATCTTTTTGGTGATGAGGAAACTTCTCGAAAAGGCGATGCGTGCTTGAATGTGATGGCTTCTCGAATTGCTACAGTCTTTGCTTCGTTGCGGgtac-caatcattattct-cacgattaacatg---actatattatgcggatgactcttctg-aatcattttggacgttacag--------------------------

upper sequence: GLYMA05G03970.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g05000.t01 (Vitis vinifera), 5'ss of exon 8
TTTAGTGGAGCTATTTGGGGATGAGGAGAATAATCGTAAAGCTGTTGCATGTTTAAATGTGATGGCTACTCGGATTGCTACAGTTTTTGCTTCATTAAGAgtatgtagtcaatgccttgctcttttatcatagaaattaaaaaattgtaatcaatgttctataattgttctaaaattgtaatcaatgttctgtaaatgtttctctag
||||| ||| || ||||||||||||||||||  ||| | || || ||||||||| ||||||||||| || || ||||||||||||||||| |||||  | ||||||| |  | |  || ||  ||  | ||  | |||  |  |   || |   ||    |||| |||  |  ||||  |                           
TTTAGAGGAACTTTTTGGGGATGAGGAGAATTCTCGCAGAGGTGATGCATGTTTGAATGTGATGGCCACCCGTATTGCTACAGTTTTTGCCTCATTGCGGgtatgtatttcaagattt-ctaattgttgattcacattgtattaagata-tttctgaagcataagtgtgttcgaatttcag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254316932|gb|GR828469.1|GR828469
EST:     GTTTAAATGTGATGGCTACTCGGATTGCTACAGTTTTTGCTTCATTAAGA                         GAATTTCCTTTTGTCCGCTTTCGTGCTGCCAAGTCCCTAGATGCAACCACA
genomic: GTTTAAATGTGATGGCTACTCGGATTGCTACAGTTTTTGCTTCATTAAGAgtatgtagtc ... gtttctctagGAATTTCCTTTTGTCCGCTTTCGTGCTGCCAAGTCCCTAGATGCAACCACA