1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGTGAAGCTTTGTTTCAGACTCATGAAAATTTAGAGCATCTTGCAATGATGGAAAGGGTACTTGGTTCATTACCACAGACCATGATGAAGAGAGTCGAgtaagtggcttaccatgctaacttgatttcaattgattgatccttaaaatatgataaatgactatgtattatgtttgtgcaaatgtttag
species | Glycine max |
transcript | GLYMA05G02740.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATGGAAAGGGTACTTGGTACATTACCACAGACCATGATGAAGAGAGTCGA CCGACATGCTGAGAAGTATGTTAGAA-GGGTAGATTAGACTGGCCTGAGGGEST: gi|208133298|gb|GD926555.1|GD926555
genomic: ATGGAAAGGGTACTTGGTTCATTACCACAGACCATGATGAAGAGAGTCGAgtaagtggct ... aaatgtttagCCGACATGCTGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGG
EST: ATGGAAAGGGTACTTGGTACATTACCACAGACCATGATGAAGAGAGTCGA CCGACATGCTGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGGEST: gi|254324743|gb|GR834168.1|GR834168
genomic: ATGGAAAGGGTACTTGGTTCATTACCACAGACCATGATGAAGAGAGTCGAgtaagtggct ... aaatgtttagCCGACATGCTGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGG
EST: CCATGATGAAGAGAGTCGA CCGACATGCTGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGGEST: gi|254323902|gb|GR840435.1|GR840435
genomic: CCATGATGAAGAGAGTCGAgtaagtggct ... aaatgtttagCCGACATGCTGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGG
EST: ATGGAAAGGGTACTTGGTTCATTACCACAGACCATGATGAAGAGAGTCGA CCGACATGCTGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGGEST: gi|207792096|gb|GD766550.1|GD766550
genomic: ATGGAAAGGGTACTTGGTTCATTACCACAGACCATGATGAAGAGAGTCGAgtaagtggct ... aaatgtttagCCGACATGCTGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGG
EST: ATGGAAAGGGTACTTGGTACATTACCACAGACCATGATGAAGAGAGTCGA CCGACATGCTGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGGEST: gi|58016463|gb|CX703205.1|CX703205
genomic: ATGGAAAGGGTACTTGGTTCATTACCACAGACCATGATGAAGAGAGTCGAgtaagtggct ... aaatgtttagCCGACATGCTGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGG
EST: ATGGAAAGGGTACTTGGTTCATTACCACAGACCATGATGAAGAGAGTCGA CCGACATGCTGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGG
genomic: ATGGAAAGGGTACTTGGTTCATTACCACAGACCATGATGAAGAGAGTCGAgtaagtggct ... aaatgtttagCCGACATGCTGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCTGAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGAAGCTTTGTTTCAGACTCATGAAAATTTAGAGCATCTTGCAATGATGGAAAGGGTACTTGGTTCATTACCACAGACCATGATGAAGAGAGTCGAgtaagtggcttaccatgctaacttgatttcaattgattgatccttaaaatatgataaatgactatgtattatgtttgtgcaaatgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA