Sequence
atgc intronic sequence ATGC exonic sequenceGGAACAAATGTTGCGCCTGCTTCATACCTGTGGCTTACCTGCAGAAGATGTAGACTTCATAAATTCTGATGGGAAGACAATGAACAGGCTGTTGCTGGAGgttggttgttttgtttggtacctttgttttcacatctaaggcattcattttgcagagaataatgttattcctgaaagattgccaatttacttatatgctt...
Basic information
species | Glycine max |
transcript | GLYMA05G01300.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G01300.2 (Glycine max), 5'ss of exon 9
lower sequence: AT5G62530.1 (Arabidopsis thaliana), 5'ss of exon 9
GGAACAAATGTTGCGCCTGCTTCATACCTGTGGCTTACCTGCAGAAGATGTAGACTTCATAAATTCTGATGGGAAGACAATGAACAGGCTGTTGCTGGAGgttggttgttttgt-ttggtacctttgttttcacatctaaggcattcattttgcagagaataatgttattcctgaaagattgccaatttacttatatgctt
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GGAGCAAATGATGCGATTGCTCCACTATTGTGGTTTACCCGCTGAAGATGTGGACTTTATAAATTCTGATGGGAAGACAATGAACAAGATATTGTTAGAGgtatttggtcaggaattcacaagtctattgtc---tccacagggtt--tttagttgagc-taattcagtgtcttgtcgatttgtaacttctttcag-----
upper sequence: GLYMA05G01300.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv17s0000g05800.t01 (Vitis vinifera), 5'ss of exon 9
GGAACAAATGTTGCGCCTGCTTCATACCTGTGGCTTACCTGCAGAAGATGTAGACTTCATAAATTCTGATGGGAAGACAATGAACAGGCTGTTGCTGGAGgttggttgttttgtttggtacctttgttttcacatctaaggcattcattttgcagagaat--aatgttattcctgaaagattgccaatttacttatatgctt--
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GGAGCAGATGATTCGATTGCTTCATCATTGTGGGTTGCCTATGGAGGATCTTGACTTTATAAATTCTGATGGAAAGACAATGAACAAACTATTATTGGAGgttcgttctcaag---aacatctt-gtaatcgctaattgtgcatcaactaaggagggatctcaactttaatccttctattcatctctttctttgattaactttaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16995634|gb|BM085006.1|BM085006EST: TAGACTTCATAAATTCTGATGGGAAGACAATGAACAGGCTGTTGCTGGAG GCAAATCCACGAATGACCCTCTTTACTGGTAGTTCAAGAGTGGCAAATAAA
genomic: TAGACTTCATAAATTCTGATGGGAAGACAATGAACAGGCTGTTGCTGGAGgttggttgtt ... atatttacagGCAAATCCACGAATGACCCTCTTTACTGGTAGTTCAAGAGTGGCAGATAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAACAAATGTTGCGCCTGCTTCATACCTGTGGCTTACCTGCAGAAGATGTAGACTTCATAAATTCTGATGGGAAGACAATGAACAGGCTGTTGCTGGAGgttggttgttttgtttggtacctttgttttcacatctaaggcattcattttgcagagaataatgttattcctgaaagattgccaatttacttatatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA