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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGGAGCTTATAGAACATCTCCGTGCAATGGGTGAAACAAATGCTCTTTATCAAATGAACAATgtaaagtatttttttttttcttttcataccaatggatattaaatacaatttccttgtatcaaatgttgtgccttggatgttgtattacatttctgaaaagaggttatgcatgtatgaacag

Basic information

species Glycine max
transcript GLYMA04G43650.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G43650.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0001g06830.t01 (Vitis vinifera), 5'ss of exon 9
CTCTGGAGCTTATAGAACATCTCCGTGCAATGGGTGAAACAAATGCTCTTTATCAAATGAACAATgtaaagtatttttttttttcttttcataccaatggatattaaatacaatttc--cttgtatcaaatgttgtgccttggatgt-tgtattacatttctgaaaagaggttatgcatgtatgaacag-----------------------------------------------------------
|||| || || ||||||||||| ||| ||||||||||||| |||||||||   || |  | ||||||||  | |||||| | || |||| | |    |   | | ||||  |  ||    || | | |  | ||  || |   |||  ||  | |   || || | | |  || ||| |   |    ||                                                           
CTCTTGACCTAATAGAACATCTGCGTTCAATGGGTGAAACTAATGCTCTTCTACAGAAAAGCAATgtaagat-ttttttctctttttttaaaattgttatttttaaaatttaggtttaattttttttacttttttcgcatataatgaatgcttcattcttttggatatatattctgctttcttactgagagtcagcttggttctacttatatcattggcaattttgatttgtgtctcaatgaaatcag