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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatatcatttttcgtgcaacacttaactggctatcttctgatctcggcaccacaactgtgtattttgtacagggattaccagatgagcaattgtt...

Basic information

species Glycine max
transcript GLYMA04G43340.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G43340.2 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os09g27950.1 (Oryza sativa), 5'ss of exon 9
TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatatc-atttttcgtgcaacacttaactggctatcttctgatctcg--gcaccacaactgtgtattttgtacagggattaccagatgagcaattgtt
| ||||||||||| ||||| |||||||| || ||||| ||||| ||||||||||||||||| ||||||||||| || ||||| ||||| || ||||||| ||| |  ||   | |    |  ||  | |   | | | |  |  | || |    | |     ||||    | ||||         |||| || | | |     
TCTGGAAGTTTGGCGAAGACGGGAACAAGTATTTCCGCCATGCCACTGGGCAGATATATGCCATCTCAAAGGACCTTGCCACATACATCTCGATCAACCGgtaagcctagagaatggctgcacatgattcttcagacaaaatattcattttactgaattgttactgatactcttgtgtc----ccaccatataacccag----

upper sequence: GLYMA04G43340.2 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os02g35870.1 (Oryza sativa), 5'ss of exon 9
TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatatcatttttcgtgcaacacttaactggctatcttctgatctcggcaccacaactgtgtattttgtacagggattaccagatgagcaattgtt
  ||||| ||||| || || ||||||||||||||||| ||||| |||||||||||||| || || ||||| || || || || |||||||| |||||||||||||| |   ||    | ||| |  |  ||        ||| ||| |     |  || | ||| |    ||   | |  ||  |||             
ACTGGAAATTTGGGGAGGAAGGGAACAAATACTTCCGTCATGCTACTGGGCAGATATACGCGATTTCAAAAGACCTCGCGACCTACATTTCAATCAACCAgtatgtttcctatgc--catgccatgcaaaatc------cttatgaccgaaaaaatactaatgtttccaatg---atgttttgtcag-------------

upper sequence: GLYMA04G43340.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G133613_T02 (Zea mays), 5'ss of exon 8
TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatatcatttttcgtgcaacacttaactggctatcttctgatctcggcaccacaactgtgtattttgtacagggattaccagatgagcaattgtt
| |||||||| ||||| || |||||||| |||||||| || || || ||||||||||| || ||||| ||||| || || || ||||| |||||||||||||| |   |    || |  | |  |   |  ||    |    |       |||| |  | |  | |   ||   ||   |  |||               
TCTGGAAGTTCGGAGAGGACGGGAACAAGTACTTCCGCCACGCCACGGGGCAGATATACGCCATCTCCAAGGACCTCGCGACCTACATCTCCATCAACCAgtaagacaaaaccttcttcttcttcttctctctcttgagtggcactggcaggcagctgatccatatgcgttcaccatataccaccgcccag---------

upper sequence: GLYMA04G43340.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G013079_T01 (Zea mays), 5'ss of exon 9
TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtata-tcatttttcgtgcaacacttaactggctatcttctgatctcggcaccacaactgtgtattttgtacagggattaccagatgagcaattgtt
  ||||| ||||| || || || || ||||||||||| ||||| || |||||||||||||| || || || ||||| || ||||| ||||| |||||||||||||| || |   | ||| ||  | ||  || || || |      |    || || |    ||    |  | |  |                        
ACTGGAAATTTGGGGAGGAAGGAAATAAATACTTCCGTCATGCCACGGGGCAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCAgtatgtttaattcatgttcatgacatacagaagtgtctgttcatctaaaggggaactaatgatgccagtgatatttatcag--------------------

upper sequence: GLYMA04G43340.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G070708_T02 (Zea mays), 5'ss of exon 9
TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatatcatttttcgtgcaacacttaactggctatcttctgatctc--ggcaccacaactgtgtattttgtacagggattaccagatgagcaattgtt
  ||||| ||||| || || || || || |||||||| ||||| || |||||||||||||| || || || |||||||| ||||| || || ||||| | |||||| ||     | |    | |||   ||  || |  ||    ||||   || |    |||||  |  |     |     ||  |||             
ACTGGAAATTTGGGGAGGAAGGAAATAAGTACTTCCGTCATGCTACAGGGCAGATATATGCCATTTCGAAAGATCTGGCGACTTATATCTCAATCAATCGgtatgtttaattcgtgtt-cacgacatacaaaagggtgcctgtccatctaaagggaaactaactg-atgctgcaagcgatatttttcag-------------

upper sequence: GLYMA04G43340.2 (Glycine max), 5'ss of exon 9
lower sequence: EFJ23757 (Selaginella moellendorffii), 5'ss of exon 8
TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatatcatttttcgtgcaacacttaactggctatcttctgatctcggcaccacaactgtgtattttgtacagggattaccagatgagcaattgtt
 |||||||||||||||||| || || |  ||||| || || |||||||| ||| ||||||| || || ||||||||||| || || || |||||||||||||||||        ||   |||||   ||   |  | |||||||    | |   ||  |  |     | ||   |||                       
ATTGGAAGTTTGGAGAAGATGGCAATAGGTACTTTCGTCACGCAACTGGTCAGCTATATGCGATTTCCAAGGATCTGGCGACATATATCTCCATCAACCAgtatgt--------ttggatgcaagctttggatt-caatcttcta--tttgtttcctgattttctcttctttcgcag-----------------------

upper sequence: GLYMA04G43340.2 (Glycine max), 5'ss of exon 9
lower sequence: EFJ30358 (Selaginella moellendorffii), 5'ss of exon 9
TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatatcatttttcgtgcaacacttaactggctatcttctgatctcggcaccacaactgtgtattttgtacagggattaccagatgagcaattgtt
  ||||||||||| ||||| || |||| |||||| || || ||||| || ||| | ||||  || |||||||||||||| |||||||| || ||||||||||| ||  || |  || | ||    |      | |||| |    |||||  |    ||  |   | ||||| | |||                       
ACTGGAAGTTTGGTGAAGACGGTAACAGATACTTTCGCCACGCAACAGGTCAGTTGTATGTGATTTCAAAGGATCTGGCGACTTACATCTCTATCAACCAgtaagtccattaagttccttgtctgatggtgttagctagc----gatctttg----acttcctcggattttttccag-----------------------

upper sequence: GLYMA04G43340.2 (Glycine max), 5'ss of exon 9
lower sequence: EFJ21395 (Selaginella moellendorffii), 5'ss of exon 8
TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatatcatttttcgtgcaacacttaactggctatcttctgatctcggcaccacaactgtgtattttgtacagggattaccagatgagcaattgtt
 |||||||||||||||||| || || |  ||||| || || |||||||| ||| ||||||| || || ||||||||||| || || || ||||| |||||||||||        ||   |||||   ||   |  | |||||||    | |   ||  |  |     | || | |||                       
ATTGGAAGTTTGGAGAAGATGGCAATAGGTACTTTCGTCACGCAACTGGTCAGCTATATGCGATTTCCAAGGATCTGGCGACATATATCTCCATTAACCAgtatgt--------ttggatgcaagctttggatt-caatcttcta--tttgtttcctgattttctcttcttttgcag-----------------------

upper sequence: GLYMA04G43340.2 (Glycine max), 5'ss of exon 9
lower sequence: EFJ28470 (Selaginella moellendorffii), 5'ss of exon 9
TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatatcatttttcgtgcaacacttaactggctatcttctgatctcggcaccacaactgtgtattttgtacagggattaccagatgagcaattgtt
  ||||||||||| ||||| || |||| |||||| || || ||||| || ||| | ||||| || |||||||||||||| ||||||||  | ||||||||||| ||  || |  || | ||    |      | |||| |    |||||  |    ||  |   | ||||| | |||                       
ACTGGAAGTTTGGTGAAGACGGTAACAGATACTTTCGCCACGCAACAGGTCAGTTGTATGCGATTTCAAAGGATCTGGCGACTTACATCGCTATCAACCAgtaagtccattaagttccttgtctgatggtgttagctagc----gatctttg----acttcctcggattttttccag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180725|gb|HO022164.1|HO022164
EST:     CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCA                         GCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTT
genomic: CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatat ... atgattgcagGCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTT
EST: gi|41146199|gb|CK606410.1|CK606410
EST:     CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCA                         GCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTT
genomic: CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatat ... atgattgcagGCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTT
EST: gi|8827480|gb|BE211210.1|BE211210
EST:     CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCA                         GCCGATGNTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTT
genomic: CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatat ... atgattgcagGCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTT
EST: gi|51337140|gb|CO981006.1|CO981006
EST:     CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCA                         GCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTT
genomic: CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatat ... atgattgcagGCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTT
EST: gi|151412778|gb|EV282590.1|EV282590
EST:     CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCA                         GCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTT
genomic: CAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatat ... atgattgcagGCCGATTTTGCATAAATATGCTAATGAAGATGTCTCACTTGGTGCATGGTT