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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTCATACACACCTTATTCAAGATATGATCTCTATTTGCCGAGAAACATTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGgtatttgtacttttaaaaatgttgatatttctattctactttgaagttgctttgatgtttcttttagaaattcattatatatatatatatatatatactt...

Basic information

species Glycine max
transcript GLYMA04G41600.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G41600.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G53120.1 (Arabidopsis thaliana), 5'ss of exon 9
---GGCTTCATACACACCTTATTCAAGATATGATCTCTATTTGCCGAGAAACATTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGgt-atttgtacttttaaaaatgttgatatttctattctactttgaagttgctttgatgtttcttttagaaattcattatatatatatatatatatatactt
   |||| ||||| || |||||| ||||||||||||| ||||||||  ||||||||||| ||   ||    ||||| |||  ||| || || |||||||| |||| |  | ||||||            | ||   |||  | | ||   |  |  |||  |       |  |||| |  | | |||| |  || |  |     
TGTGGCTCCATACTCATCTTATTGAAGATATGATCTCCATTTGCCGTCAAACATTCAAAAGT---GTTCACTATGCGTGGAGCAGCGTCCCCACATATCCAAGgttaactctacttt------------tcttctgattacattgtgtgatctcactgaaatcagaaacatgaattgagca-acatatcttcat-tgcag----

upper sequence: GLYMA04G41600.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv16s0050g02670.t01 (Vitis vinifera), 5'ss of exon 9
GGCTTCATACACACCTTATTCAAGATATGATCTCTATTTGCCGAGAAACATTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGgtatttgt------acttttaaaaatg-ttgatatttctattc-tactttgaagttgctttgatgtttcttttagaaattcattatatatatatatatatatatactt
|||| || ||||| |||||||| |||||| | |||||||| || ||||||||||| ||||| ||   |||||| ||||| ||||| || |||||||| ||||| |  |      |  | || | |||  | ||   |||| |  |  |||    ||| | |  ||    ||  ||||||    ||    |   |    | ||      
GGCTCCACACACATCTTATTCAGGATATGCTTTCTATTTGTCGTGAAACATTCAAGGGTTCGGTCCATTATGCATGGGCAAGTGTTCCTACATATCCAAGgtaatcatgtattgatctctatatatggctaattgctctactgattttttctctttggtctattgccctttccagaaat--gataagggtgatttggaagat------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337279|gb|CO981145.1|CO981145
EST:     TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAG                         TGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTT
genomic: TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGgtatttgtac ... ttgcatgcagTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTT
EST: gi|254327482|gb|GR837105.1|GR837105
EST:     TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAG                         TGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTT
genomic: TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGgtatttgtac ... ttgcatgcagTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTT
EST: gi|254318082|gb|GR832250.1|GR832250
EST:     TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAG                         TGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTT
genomic: TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGgtatttgtac ... ttgcatgcagTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTT
EST: gi|18040670|gb|BM308964.1|BM308964
EST:     TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAG                         TGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAAGGCCGCCTGTTGATTT
genomic: TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGgtatttgtac ... ttgcatgcagTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTT
EST: gi|51338286|gb|CO982152.1|CO982152
EST:     TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAG                         TGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTT
genomic: TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGgtatttgtac ... ttgcatgcagTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTT
EST: gi|254325923|gb|GR838804.1|GR838804
EST:     TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAG                         TGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTT
genomic: TTCAAAGGTTCTGTATGTTATGCTTGGGCCAGTGTACCAACATATCCTAGgtatttgtac ... ttgcatgcagTGGTGTGATAGGCTTTCTTCTCTGTGCAACAGAAGGGCCGCCTGTTGATTT