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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCCCAATTCAGTTGCATCACATGTTCCTCAATCACATGTTGGGCATTTTCACCCAGTGCCGTCAATGTCACCTGTGCAGCAGTGGCAAAATCATCAGgtataaaaagaataccgatatttaagctctctgcattgctatctgtatttaaaatgtctgcatatttatacttgtttcttcag

Basic information

species Glycine max
transcript GLYMA04G40900.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26057245|gb|CA800159.1|CA800159
EST:     TTCACCCAGTGCCGTCAATGTCACCTGTGCAGCAGTGGCAAAATCATCAG                         TCTGTGTCAGAGGGTTCACAGGTACCTGTACAGGAACATTCTTCACCATCT
genomic: TTCACCCAGTGCCGTCAATGTCACCTGTGCAGCAGTGGCAAAATCATCAGgtataaaaag ... gtttcttcagTCTGTGTCAGAGGGTTCACAGGTACCTGTACAGGAACATTCTTCACCATCT
EST: gi|10237135|gb|BE806023.1|BE806023
EST:     TTCACCCAGTGCCGTCAATGTCACCTGTGCAGCAGTGGCAAAATCATCAG                         TCTGTGTCAGAGGGTTCACAGGTACCTGTACAGGAGCATTCTTCACCATCT
genomic: TTCACCCAGTGCCGTCAATGTCACCTGTGCAGCAGTGGCAAAATCATCAGgtataaaaag ... gtttcttcagTCTGTGTCAGAGGGTTCACAGGTACCTGTACAGGAACATTCTTCACCATCT
EST: gi|17154076|gb|BM144009.1|BM144009
EST:     TTCACCCAGTGCCGTCAATGTCACCTGTGCAGCAGTGGCAAAATCATCAG                         TCTGTGTCAGAGGGTTCACAGGTACCTGTACAGGAACATTCTTCACCATCT
genomic: TTCACCCAGTGCCGTCAATGTCACCTGTGCAGCAGTGGCAAAATCATCAGgtataaaaag ... gtttcttcagTCTGTGTCAGAGGGTTCACAGGTACCTGTACAGGAACATTCTTCACCATCT