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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgtagcttttcatggaactagacctttaatgtttattgttgattgaattttaagtatcatttgaggtatttcccactattttttggtgtattcatctgggttcaatgtttgagtttttgttattgtttgaatttaattatcttgtaaaatattttccatcattttggtgtgttatccag

Basic information

species Glycine max
transcript GLYMA04G40760.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335860|gb|CO979726.1|CO979726
EST:     CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
genomic: CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgtagct ... tgttatccagGTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
EST: gi|10238752|gb|BE807640.1|BE807640
EST:     CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
genomic: CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgtagct ... tgttatccagGTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
EST: gi|12773859|gb|BG238786.1|BG238786
EST:     AGCTTACTCAAGCTGATGTCTTTCTCTTCTTTGAATCTATTTGCGGAGAG                         GTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
genomic: AGCTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgtagct ... tgttatccagGTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
EST: gi|254327105|gb|GR836714.1|GR836714
EST:     CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
genomic: CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgtagct ... tgttatccagGTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
EST: gi|209727239|gb|BW663300.1|BW663300
EST:     CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
genomic: CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgtagct ... tgttatccagGTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
EST: gi|254339083|gb|GR847800.1|GR847800
EST:     CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
genomic: CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgtagct ... tgttatccagGTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
EST: gi|254334793|gb|GR844578.1|GR844578
EST:     CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
genomic: CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgtagct ... tgttatccagGTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
EST: gi|10233834|gb|BE802722.1|BE802722
EST:     CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
genomic: CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgtagct ... tgttatccagGTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
EST: gi|26268235|gb|CA819298.1|CA819298
EST:     CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
genomic: CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgtagct ... tgttatccagGTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
EST: gi|192307294|gb|FK002372.1|FK002372
EST:     CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAG                         GTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT
genomic: CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgtagct ... tgttatccagGTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGCGGAGAGgtttgtagcttttcatggaactagacctttaatgtttattgttgattgaattttaagtatcatttgaggtatttcccactattttttggtgtattcatctgggttcaatgtttgagtttttgttattgtttgaatttaattatcttgtaaaatattttccatcattttggtgtgttatccag

- - - CAAGCT
- - -  AAGCTG
- - - - AGCTGA
- - - -  GCTGAT