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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAGgttatttggaaacccttatgtaatactaatttgatataattatctgtgatttgaattctgagttcatctgattctttttgtttctaagagttgatatatctaatagataaggaatattgtacag

Basic information

species Glycine max
transcript GLYMA04G37810.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37810.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G459746_T01 (Zea mays), 5'ss of exon 13
AACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAGgttatttggaaacccttat-------gtaatactaatttgatataattatctgtgatttgaattctg---agttcatctgattctttttgtttctaaga-gttgatatatctaa--tagataagga-atattgtacag-----------------------
|| |||||||||||||||||||| |||||||| |||| | || ||   || || ||||||||  |  |||| |       |  |  ||       ||  ||||   ||||| |||  |  ||| |  |    | ||   |  | || ||  |       ||| ||    | | | |||||     |  | |  ||  |  | | | |                       
AATAAATGTAATGTTGGCTATGCTTTCATCAACATGACCAATGCTCAGCATATCATTCCATTTTATCAGgtcagaaaattattccaattgacgaagtgctactgcattgatgtaa--agttgtaaactagcctttggtcaacttatatgccttgccaaatttgtactttgataaaatatccggcttgaacatcgacgtgctatcctgagccattttgtcatctttttcag

upper sequence: GLYMA04G37810.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G451716_T01 (Zea mays), 5'ss of exon 13
AACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAGgttatttggaaacccttatgtaatactaatttgatataattatctgtgatttgaattctgagttcatctgattctttttgtttctaagagttgatatatctaatagataaggaatattgtacag
|| || || |||||||| |||||||||||||| |||||| ||||||   | ||| |||||||  | ||||| |  |   ||  | ||  ||| |  ||   ||   |  |||  |    | |      |  ||    | |    ||    | |  | | |||   |  | |  |                   
AATAAGTGCAATGTTGGTTATGCATTCATCAACATGATCAATCCTGACAATATTGTTCCATTTTATAAGgtgagattctaaaacatacttaaaa--aaacagacgaacctatgaggagctagg---tagcattttattaagaaattaaactccccaaatttgtcttgacaagga-------------------

upper sequence: GLYMA04G37810.2 (Glycine max), 5'ss of exon 9
lower sequence: EFJ28200 (Selaginella moellendorffii), 5'ss of exon 10
AACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAGgttatttggaaacccttatgtaatactaatttgatataattatctgtgatttgaattctgagttcatctgattctttttgtttctaagagttgatatatctaatagataaggaatattgtacag
|||||||| || |||||||||||||||||||| |||| ||| || |  || ||  | || ||  ||||||||   |  |  | ||       | ||   | | | ||||  |   || |      |||| |    || |                                                      
AACAAATGCAACGTTGGCTATGCATTCATCAACATGACCGAGCCAGCTCACATCGTCCCCTTTTACAAGgttcgatcaattctctcgc----tcct--ctggttgtaatccttgttggt---ggctctgtgactttcag------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298176430|gb|HO026665.1|HO026665
EST:     ATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAG                         GCTTTTCATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTA
genomic: ATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAGgttatttgga ... tattgtacagGCTTTTCATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTA
EST: gi|9563828|gb|BE473337.1|BE473337
EST:     ATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAG                         GCTTTTCATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTA
genomic: ATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAGgttatttgga ... tattgtacagGCTTTTCATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTA
EST: gi|7796615|gb|AW782012.1|AW782012
EST:     ATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAG                         GCTTTTCATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTA
genomic: ATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAGgttatttgga ... tattgtacagGCTTTTCATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTA
EST: gi|151407718|gb|EV277533.1|EV277533
EST:     ATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAG                         GCTTTTCATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTA
genomic: ATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAGgttatttgga ... tattgtacagGCTTTTCATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTA
EST: gi|11273713|gb|BF324089.1|BF324089
EST:     TGCATTCATCAATATGATCGATCCTGGACAAATTATTCCCTTCCCACAAG                         -CTTNTCATGGG
genomic: TGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCC-ACAAGgttatttgga ... tattgtacagGCTTTTCATGGG