Sequence
atgc intronic sequence ATGC exonic sequenceTGATGCTACAGCAGCTTTGGAACAACAGCAAGAAGCTGAAGCTGAAGCAAAGTCTCTTCGCACAATGACACAAAGAATGATTTTGACCCAAGAAGAAATGgtttgtgtttaccattgaaataagatttaacaagtcttcaatttcccatttgtcttaattcgtcttcttatctgtcttttag
Basic information
species | Glycine max |
transcript | GLYMA04G37710.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G37710.1 (Glycine max), 5'ss of exon 9
lower sequence: AT4G25070.2 (Arabidopsis thaliana), 5'ss of exon 8
TGATGCTACAGCAGCTTTGGAACAACAGCAAGAAGCTGAAGCTGAAGCAAAGTCTCTTCGCACAATGACACAAAGAATGATTTTGACCCAAGAAGAAATGgtttgtgtttaccattgaaa-taagatttaacaagtcttcaattt---cccatttgtcttaattcgtcttcttatctgtcttttag---------
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TGAAGCAGAGAAATCCACGGAACAGCTCCAGGAGGTTGAAGCTGAAATAAAGTCTCTTCGGACAATGATACATAGAACGATTTTGAGTCAAGAAGAAATGgtttg--cttacaatctaaactagaattttgtgcattgacggtttaactccaccttctttgtttcatttaactatatgattgaccaaccttgcag
upper sequence: GLYMA04G37710.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G48860.2 (Arabidopsis thaliana), 5'ss of exon 9
TGATGCTACAGCAGCTTTGGAACAACAGCAAGAAGCTGAAGCTGAAGCAAAGTCTCTTCGCACAATGACACAAAGAATGATTTTGACCCAAGAAGAAATGgtttgt-------------gtttaccattgaaataagatttaacaagtcttcaatttcccatttgtcttaattcgtcttcttatctgtcttttag
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TGAGGCTACAACTGCTGCAGAACGGCTTCAAGAAGCAGAGTCTGAAGCGAAGTCTCTTCGCACAATGACTCAGAGGATGATTTTAACACAGGATGAAATGgtttgtcaaaaaatcttgggtctcgtaatgtaccaataattgataaggttctgaggttctgactttatgaatg-attgaattatctag-------
upper sequence: GLYMA04G37710.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv17s0000g00390.t01 (Vitis vinifera), 5'ss of exon 9
TGATGCTACAGCAGCTTTGGAACAACAGCAAGAAGCTGAAGCTGAAGCAAAGTCTCTTCGCACAATGACACAAAGAATGATTTTGACCCAAGAAGAAATGgtttgtgtttac-cattgaaataagatttaacaagtcttcaatttcccatttgtcttaattcgtcttcttatctgtcttttag
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TGGTGCCACAACTGCTATAGAACAACTTCAAGAAGCAGAATCTGAAGCAAAAGCTCTTCGCTCCATGACAAAAAGAATGATTTTGACTCAGGAGGAGATGgtgtgtccataaatggtagtattagtaatgactaactgttcagacactaattgtataactgcatctatttttcag--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23064600|gb|BU579373.1|BU579373EST: AGTCTCTTCGCACAATGACACAAAGAATGATTTTGACCCAAGAAGAAATG GAGGAAGTTGTCTTGAAGTTATGTTGGCTAGCCCGCTACTGGGGTCTTGCT
genomic: AGTCTCTTCGCACAATGACACAAAGAATGATTTTGACCCAAGAAGAAATGgtttgtgttt ... tgtcttttagGAGGAAGTTGTCTTGAAGAGATGTTGGCTAGCCCGCTACTGGGGTCTTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATGCTACAGCAGCTTTGGAACAACAGCAAGAAGCTGAAGCTGAAGCAAAGTCTCTTCGCACAATGACACAAAGAATGATTTTGACCCAAGAAGAAATGgtttgtgtttaccattgaaataagatttaacaagtcttcaatttcccatttgtcttaattcgtcttcttatctgtcttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA