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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCAAATCCAGAATGTGTCATAATTGATACACCCATTGTTGATGCACTTCACACTATGCATGATGGGAAATTTTTGCATCTTCCTGTGGTTGATAGAGgtaatgtaatgtatatgggatagggaagattgaagagctatatgcatcaatattttttctgatttgggtttggtggttgaaaacag

Basic information

species Glycine max
transcript GLYMA04G37370.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37370.3 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G171622_T01 (Zea mays), 5'ss of exon 8
ACTCCAAATCCAGAATGTGTCATAATTGATACACCCATTGTTGATGCACTTCACACTATGCATGATGGGAAATTTTTGCATCTTCCTGTGGTTGATAGAGgtaatgtaatgtat-atgggatagg-gaagattgaaga-gctatatgcatcaatatt-ttttctgatttgggtttggtggttgaaaacag
||||  | ||| ||||||| || | | || || || ||| ||||||| |||||||| |||||||||||||||||||| ||| | |||||  | || || ||||     ||| |  ||| | ||   |||   ||  |  |   | || |  || | | |||  ||  |  |   |  ||  |  |  |||
ACTCAGAGTCCTGAATGTGCCACAGTGGACACCCCAATTCTTGATGCTCTTCACACAATGCATGATGGGAAATTTTTACATTTGCCTGTCCTGGACAGGGgtatgtctatgaaccatgagctaactgaaccctgtcgttgtcttttgtaataagactgtttaatgggtatgacatattgtcttcatccag

upper sequence: GLYMA04G37370.3 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G133621_T01 (Zea mays), 5'ss of exon 5
ACTCCAAATCCAGAATGTGTCATAATTGATACACCCATTGTTGATGCACTTCACACTATGCATGATGGGAAATTTTTGCATCTTCCTGTGGTTGATAGAGgtaatgtaatgtatatgggatagggaagattgaagagctatatgcatcaatattttttctgatttgggtttggtggttgaaaacag
||||    ||| ||||||| |    | || || || ||| ||||||| |||||||| ||||||||||| |||||||| ||| | |||||  | || || |||| ||| ||| |      |||         || |   | |||     ||| ||    | | | ||   |    | ||  |  |||
ACTCAGTGTCCTGAATGTGCCTCGGTAGACACCCCAATTCTTGATGCTCTTCACACAATGCATGATGGAAAATTTTTACATTTGCCTGTTCTGGACAGGGgta-tgtcatgaact--aaataaattcaggcgatgtcttttataag--aatgttaaaacaggtatgacatgttggcttttatccag

upper sequence: GLYMA04G37370.3 (Glycine max), 5'ss of exon 9
lower sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 9
ACTCCAAATCCAGAATGTGTCATAATTGATACACCCATTGTTGATGCACTTCACACTATGCATGATGGGAAATTTTTGCATCTTCCTGTGGTTGATAGAGgtaatgtaatgtatatgggatagggaagattgaagagctatatgcatcaatattttttctg-----atttgggtttgg-tggttgaaaacag
|||||||||||||||||||  | |||||||||||||||||||||||| || || || |||||||||||||||||||| || ||||||||  |||||||||||||  |  | |||||   | ||  ||  ||  | | ||||||   |  || | |  |||      ||||  |||||| ||| || |  |||
ACTCCAAATCCAGAATGTGCAACAATTGATACACCCATTGTTGATGCCCTACATACCATGCATGATGGGAAATTTTTACACCTTCCTGTCATTGATAGAGgtaacatgctttatatta-agagctaaactt--atacctatattttttgatttctcatcttggtttatttatgtttggatggctggatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11413123|gb|BF425134.1|BF425134
EST:     TCACACTATGCATGATGGGAAATTTTTGCATCTTCCTGTGGTTGATAGAG                         ATGGCAGTGTAGTTGCTGTGGTTGATGTGATTCATGTCACTCATGCTGCAG
genomic: TCACACTATGCATGATGGGAAATTTTTGCATCTTCCTGTGGTTGATAGAGgtaatgtaat ... ttgaaaacagATGGCAGTGTAGTTGCTGTGGTTGATGTGATTCATGTCACTCATGCTGCAG