1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AATTTGTGTGTAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAGgtatggctttctgcaatgacgacttagcagtatgctagttttttttttttttttttttaagtttttcatttttctcgattgtaaacatagttagaatggtctgagcttgcatgaatcattcttacttaatgtataatttgttgatgcatgacag
species | Glycine max |
transcript | GLYMA04G37050.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAG G--C----TGCTGCTGTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGAEST: gi|10843383|gb|BF066683.1|BF066683
genomic: TAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAGgtatggcttt ... tgcatgacagGAACAGGCTGCTGCTGTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGA
EST: TAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAG GAACAGGCTGCTGCTGTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGAEST: gi|10845533|gb|BF071131.1|BF071131
genomic: TAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAGgtatggcttt ... tgcatgacagGAACAGGCTGCTGCTGTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGA
EST: TAACTGCTGCACACCGTCCAATTAAAGAGATATTAGATAAGGAGAAAAAT GAACAGGCTGCTGCTGTATCAGAACGTAGACCTGCTCCAGCATCAAGTGCA
genomic: TAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAGgtatggcttt ... tgcatgacagGAACAGGCTGCTGCTGTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTTGTGTGTAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAGgtatggctttctgcaatgacgacttagcagtatgctagttttttttttttttttttttaagtttttcatttttctcgattgtaaacatagttagaatggtctgagcttgcatgaatcattcttacttaatgtataatttgttgatgcatgacag
- - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA