1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGTGAAGCTTTGTTTCAGACTCATGAAAATTTAGAGCATCTGGCTATGATGGAGAGGGTGCTTGGTCCTATACCACAGCAGATGTTAAAGAGAGTTGAgtaagtgatttaccttgtgaattttctattattatcaaatttatcaaatgattgaacttgaacataaccgagtgtatcttttactctgcccatgtag
species | Glycine max |
transcript | GLYMA04G36360.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATGGAGAGGGTGCTTGGTCCTATACCACAGCAGATGTTAAAGAGAGTTGA CCGACATGCAGAGAAGTATGTTCGAAGGGGTAGGTTGGACTGGCCAGAGGGEST: gi|254346650|gb|GR856372.1|GR856372
genomic: ATGGAGAGGGTGCTTGGTCCTATACCACAGCAGATGTTAAAGAGAGTTGAgtaagtgatt ... gcccatgtagCCGACATGCAGAGAAGTATGTTCGAAGGGGTAGGTTGGACTGGCCAGAGGG
EST: GTGCTTGGTCCTATACCACAGCAGATGTTAAAGAGAGTTGA CCGACATGCAGAGAAGTATGTTCGAAGGGGTAGGTTGGACTGGCCAGAGGGEST: gi|254346649|gb|GR856371.1|GR856371
genomic: GTGCTTGGTCCTATACCACAGCAGATGTTAAAGAGAGTTGAgtaagtgatt ... gcccatgtagCCGACATGCAGAGAAGTATGTTCGAAGGGGTAGGTTGGACTGGCCAGAGGG
EST: GTGCTTGGTCCTATACCACAGCAGATGTTAAAGAGAGTTGA CCGACATGCAGAGAAGTATGTTCGAAGGGGTAGGTTGGACTGGCCAGAGGGEST: gi|58021621|gb|CX708362.1|CX708362
genomic: GTGCTTGGTCCTATACCACAGCAGATGTTAAAGAGAGTTGAgtaagtgatt ... gcccatgtagCCGACATGCAGAGAAGTATGTTCGAAGGGGTAGGTTGGACTGGCCAGAGGG
EST: ATGGAGAGGGTGCTTGGTCCTATACCACAGCAGATGTTAAAGAGAGTTGA CCGCCATGCAGAGAAGTATGTTCGAAGGGGTAGGTTGGACTGGCCAGAGGG
genomic: ATGGAGAGGGTGCTTGGTCCTATACCACAGCAGATGTTAAAGAGAGTTGAgtaagtgatt ... gcccatgtagCCGACATGCAGAGAAGTATGTTCGAAGGGGTAGGTTGGACTGGCCAGAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGAAGCTTTGTTTCAGACTCATGAAAATTTAGAGCATCTGGCTATGATGGAGAGGGTGCTTGGTCCTATACCACAGCAGATGTTAAAGAGAGTTGAgtaagtgatttaccttgtgaattttctattattatcaaatttatcaaatgattgaacttgaacataaccgagtgtatcttttactctgcccatgtag
- - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA